Explore projects

CG Surface Hopping - simulation and analysis scripts

All the code for manuscript: Gour et al., 2020

Connectomic Data Analysis Toolkit

CUDA compatible Motion correction for Calcium imaging data based on control point determination by cross correlation.

This repository includes scripts for the tracking of the molecular beacons in the pubblication "Differential regulation of local mRNA dynamics and translation following long-term potentiation and depression", Donlin-Asp P. G. et al., (2020).

Clone of gerrit based pytorbeam to test changes via jenkins

This repository contains all the code and data used for the following manuscript: Postnatal connectomic development of inhibitory axons in mouse barrel cortex

Code for EM stack acquisition part of the following paper: " Neuropathic pain caused by mis-wiring and abnormal end organ targeting", Gangadharan et al 2022

Contains all code required for the FluoEM method

Code repository for Klinger, Motta, Marr, Theis, Helmstaedter (2021) Nature Communications

"Connectomic comparison of mouse and human cortex" Loomba*, Straehle*, Ganghadaran*, Heike*, Khalifa*, Motta*, Ju, Sievers, Gempt, Meyer, Helmstaedter (*equally contributing)