- Aug 10, 2022
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Alexandra Rother authored
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- Jul 15, 2022
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Alexandra Rother authored
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- Dec 18, 2021
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Philipp authored
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Philipp Schubert authored
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- Nov 29, 2021
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Philipp Schubert authored
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Philipp Schubert authored
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Philipp Schubert authored
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- Nov 22, 2021
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Philipp Schubert authored
change `rep_coord` calculation of 'syn_ssv' (the closest voxel to center mass) and 'cs_ssv' (the closest vertex to center of mass)
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- Nov 21, 2021
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Philipp Schubert authored
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Philipp Schubert authored
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- Nov 15, 2021
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Philipp Schubert authored
improve logging of cs extraction; @hashirah Please adapt the key for loading the numpy cache array in `filter_ssd_by_total_pathlength` once you added it
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Philipp Schubert authored
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Philipp Schubert authored
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- Nov 11, 2021
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Philipp Schubert authored
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- Oct 29, 2021
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Philipp Schubert authored
improve handling of rare input cases in prediction_pts.py and refine synapse RF features; fix ImportError causes incomplete sphinx build
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- Oct 14, 2021
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Philipp Schubert authored
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- Aug 23, 2021
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Philipp Schubert authored
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- Aug 18, 2021
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Philipp Schubert authored
support parallel querying in `SuperSegmentationDataset.sv2ssv_ids` (II), fix data type issue in cs_processing_steps.py
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Philipp Schubert authored
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Philipp Schubert authored
add `VoxelStorageLazyLoading`, refactor cs_processing_steps.py and `VoxelStorageDyn` to use `VoxelStorageLazyLoading` for storing and loading cached voxels of 'syn' and 'syn_ssv'
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- Aug 17, 2021
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Philipp Schubert authored
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- Jul 21, 2021
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Philipp Schubert authored
* for consistency, `detect_cs` now also uses `detect_seg_boundaries` (same as `detect_cs_64bit`)
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- Jul 06, 2021
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Philipp Schubert authored
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- Jul 05, 2021
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Philipp Schubert authored
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- Jul 01, 2021
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pschubert authored
* fix incorrect usage of new `mapping_lookup_reverse` in `filter_relevant_syn` * explicitly store voxels of syn and syn_ssv via `VoxelStorageDyn` * change handling of segmentation cubes to support uint64 until synapse extraction step
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Philipp Schubert authored
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- May 25, 2021
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Philipp Schubert authored
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- May 20, 2021
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Philipp Schubert authored
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- May 05, 2021
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Philipp authored
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- May 03, 2021
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Philipp authored
#30 refactoring, code clean-up, parameter tweaks; fix issue with numpy array certainty cache; add kimimaro parameters to config
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- Apr 21, 2021
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pschubert authored
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- Apr 19, 2021
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Philipp Schubert authored
#TODO add downstream handling of contact sites with tuple identifier
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- Apr 16, 2021
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Philipp authored
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- Apr 15, 2021
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Philipp Schubert authored
* add `generate_cs_ssv` parameter to config.yml * add generator `iter_so_dir_paths` to `SegmentationDataset` (#TODO replace old usages) * rework `combine_and_split_cs` and add it to pipeline in exec_syns.py (executed if `generate_cs_ssv=True`)
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- Apr 07, 2021
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Philipp Schubert authored
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Philipp Schubert authored
change to working elektronn3 branch, update and improve dependency restrictions, remove deprecation warnings
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- Dec 18, 2020
- Nov 12, 2020
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Philipp authored
add `exclude_nodes` feature for slurm; add `slurm` section with `exclude_nodes` parameter to config.yml
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- Nov 11, 2020
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pschubert authored
rename `SuperSegmentationDataset.load_cached_data` and `SegmentationDataset.load_cached_data` to `load_numpy_data`
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