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#30 further integrate merge and split of contact sites (`cs_ssv`)
* add `generate_cs_ssv` parameter to config.yml * add generator `iter_so_dir_paths` to `SegmentationDataset` (#TODO replace old usages) * rework `combine_and_split_cs` and add it to pipeline in exec_syns.py (executed if `generate_cs_ssv=True`)
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- environment.yml 1 addition, 1 deletionenvironment.yml
- examples/start.py 47 additions, 47 deletionsexamples/start.py
- scripts/jklimesch/ground_truth/j0251_convert_annotations.py 20 additions, 9 deletionsscripts/jklimesch/ground_truth/j0251_convert_annotations.py
- scripts/jklimesch/ground_truth/utils.py 2 additions, 1 deletionscripts/jklimesch/ground_truth/utils.py
- syconn/backend/base.py 1 addition, 1 deletionsyconn/backend/base.py
- syconn/backend/storage.py 9 additions, 1 deletionsyconn/backend/storage.py
- syconn/exec/exec_syns.py 17 additions, 3 deletionssyconn/exec/exec_syns.py
- syconn/extraction/cs_processing_steps.py 46 additions, 80 deletionssyconn/extraction/cs_processing_steps.py
- syconn/handler/config.yml 8 additions, 4 deletionssyconn/handler/config.yml
- syconn/proc/meshes.py 35 additions, 15 deletionssyconn/proc/meshes.py
- syconn/proc/sd_proc.py 2 additions, 2 deletionssyconn/proc/sd_proc.py
- syconn/reps/segmentation.py 20 additions, 4 deletionssyconn/reps/segmentation.py
- tests/test_run.py 4 additions, 1 deletiontests/test_run.py
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