Commits · 08a03f89ff8142efee96e86d68f5e2c16f141e6a · Philipp Schubert / SyConn · GitLab

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Nov 29, 2021
- store cs_ids in cs_ssv attribute dicts; compress cs_ssv meshes to save disk space · 08a03f89
  Philipp Schubert authored 3 years ago
  
  08a03f89
- hotfix: apply masks correctly in `filter_relevant_syn` in the case of 'cs' · 46adfcb6
  Philipp Schubert authored 3 years ago
  
  46adfcb6
Nov 22, 2021
- change `rep_coord` calculation of 'syn_ssv' (the closest voxel to center mass)... · 4917556f
  Philipp Schubert authored 3 years ago
  4917556f
Nov 21, 2021
- WIP: @pschubert add usage of center of mass approximation for `syn_ssv` and `cs_ssv` again · 681f0af7
  Philipp Schubert authored 3 years ago
  
  681f0af7
- add myelin prediction to start.py · 3f0b7104
  Philipp Schubert authored 3 years ago
  
  3f0b7104
Nov 15, 2021
- improve logging of cs extraction; @hashirah Please adapt the key for loading... · 126d1547
  Philipp Schubert authored 3 years ago
  126d1547
- add parameter to restrict contact site (cs_ssv) extraction to cells with minimum path length · e14d49e6
  Philipp Schubert authored 3 years ago
  
  e14d49e6
- fix 0-dilation/closing bug in cs_extraction_steps.py, various updates · 80cda171
  Philipp Schubert authored 3 years ago
  
  80cda171
Nov 11, 2021
- add proper handling of zero-length vertex arrays · e3a3241d
  Philipp Schubert authored 3 years ago
  
  e3a3241d
Oct 29, 2021
- improve handling of rare input cases in prediction_pts.py and refine synapse... · e742e3d9
  Philipp Schubert authored 3 years ago
  e742e3d9
Oct 14, 2021
- minor changes · 3309c466
  Philipp Schubert authored 3 years ago
  
  3309c466
Aug 23, 2021
- minor changes · 886cae82
  Philipp Schubert authored 3 years ago
  
  886cae82
Aug 18, 2021
- support parallel querying in `SuperSegmentationDataset.sv2ssv_ids` (II), fix... · 2bdd56f2
  Philipp Schubert authored 3 years ago
  2bdd56f2
- support parallel querying in `SuperSegmentationDataset.sv2ssv_ids` · 8e87b50c
  Philipp Schubert authored 3 years ago
  
  8e87b50c
- add `VoxelStorageLazyLoading`, refactor cs_processing_steps.py and... · 5462d6c8
  Philipp Schubert authored 3 years ago
  5462d6c8
Aug 17, 2021
- allow skipping of already processed syn_ssv in `_combine_and_split_syn_thread` · 709d6414
  Philipp Schubert authored 3 years ago
  
  709d6414
Jul 21, 2021
- Fix attempt for vigra import error; minor changes · dd7f4370
  Philipp Schubert authored 4 years ago
  dd7f4370
Jul 06, 2021
- implement #35 · b6b466e7
  Philipp Schubert authored 4 years ago
  
  b6b466e7
Jul 05, 2021
- fix bug in synssv rep coord · 5cbcec56
  Philipp Schubert authored 4 years ago
  
  5cbcec56
Jul 01, 2021
- fixes and improvements · b6a1db75
  pschubert authored 4 years ago
  b6a1db75
- remove `id_changer` and `mapping_dict_reversed` in `SuperSegmentationDataset` · bbb616b5
  Philipp Schubert authored 4 years ago
  
  bbb616b5
May 25, 2021
- improve runtime of `save_dataset_deep` when `extract_only=False` · 2469b019
  Philipp Schubert authored 4 years ago
  
  2469b019
May 20, 2021
- minor changes · c1ff5e44
  Philipp Schubert authored 4 years ago
  
  c1ff5e44
May 05, 2021
- #30 further refactoring and code clean-ups; fix scikit-learn version · f50479ba
  Philipp authored 4 years ago
  
  f50479ba
May 03, 2021
- #30 refactoring, code clean-up, parameter tweaks; fix issue with numpy array... · eaaabed2
  Philipp authored 4 years ago
  eaaabed2
Apr 21, 2021
- #31 refactoring and 64 bit property extraction of cs/syn · 54801fdb
  pschubert authored 4 years ago
  
  54801fdb
Apr 19, 2021
- #30 add new contact site detection method `detect_cs_64bit` for 64 bit · 3ab059fb
  Philipp Schubert authored 4 years ago
  3ab059fb
Apr 16, 2021
- #30 default parameter adaption, minor changes · f22067c2
  Philipp authored 4 years ago
  
  f22067c2
Apr 15, 2021
- #30 further integrate merge and split of contact sites (`cs_ssv`) · 140838ee
  Philipp Schubert authored 4 years ago
  140838ee
Apr 07, 2021
- minor changes · 9bf65ecc
  Philipp Schubert authored 4 years ago
  
  9bf65ecc
- change to working elektronn3 branch, update and improve dependency... · 42e6c36b
  Philipp Schubert authored 4 years ago
  42e6c36b
Dec 18, 2020
- fix type hints in `filter_relevant_syn` · 03276c80
  pschubert authored 4 years ago
  
  03276c80
- remove legacy code; add prototype for `cs_ssv` generation; fix... · e343ceef
  pschubert authored 4 years ago
  e343ceef
Nov 12, 2020
- add `exclude_nodes` feature for slurm; add `slurm` section with... · cb67f8f3
  Philipp authored 4 years ago
  cb67f8f3
Nov 11, 2020
- rename `SuperSegmentationDataset.load_cached_data` and... · 9a680db9
  pschubert authored 4 years ago
  9a680db9
Oct 24, 2020
- fix gitlab runner freezes · dd7c8ab2
  Philipp Schubert authored 4 years ago
  dd7c8ab2
Sep 29, 2020
- fixes and improvements · b59ffd0f
  Philipp Schubert authored 4 years ago
  b59ffd0f
Sep 25, 2020
- minor changes · ad3f5fbd
  Philipp Schubert authored 4 years ago
  
  ad3f5fbd
Sep 24, 2020
- minor changes · c3900e36
  pschubert authored 4 years ago
  
  c3900e36
Sep 21, 2020
- improvements and fixes · cb2043d6
  Philipp Schubert authored 4 years ago and Philipp Schubert committed 4 years ago
  cb2043d6