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Commit 1c7d78d9 authored by Rachita Srivastava's avatar Rachita Srivastava
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Update fst.sh

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vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp1 --weir-fst-pop grp2 --out grp1_grp2
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp1 --weir-fst-pop grp3 --out grp1_grp3
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp1 --weir-fst-pop grp4 --out grp1_grp4
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp1 --weir-fst-pop grp5 --out grp1_grp5
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp1 --weir-fst-pop grp6 --out grp1_grp6
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp2 --weir-fst-pop grp3 --out grp2_grp3
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp2 --weir-fst-pop grp4 --out grp2_grp4
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp2 --weir-fst-pop grp5 --out grp2_grp5
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp2 --weir-fst-pop grp6 --out grp2_grp6
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp3 --weir-fst-pop grp4 --out grp3_grp4
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp3 --weir-fst-pop grp5 --out grp3_grp5
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp3 --weir-fst-pop grp6 --out grp3_grp6
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp4 --weir-fst-pop grp5 --out grp4_grp5
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp4 --weir-fst-pop grp6 --out grp4_grp6
vcftools --gzvcf concat_snps_less_miss.vcf.gz --weir-fst-pop grp5 --weir-fst-pop grp6 --out grp5_grp6
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