Added lot of MD parsing functionality.

...er/parser-cpmd/cpmdparser/versions/cpmd41/commonparser.py

parser/parser-cpmd/cpmdparser/versions/cpmd41/mdparser.py

test/unittests/cpmd_4.1/md/dcd/ENERGIES

test/unittests/cpmd_4.1/md/dcd/GEOMETRY

test/unittests/cpmd_4.1/md/dcd/GEOMETRY.xyz

test/unittests/cpmd_4.1/md/dcd/RESTART.1

test/unittests/cpmd_4.1/md/dcd/TRAJEC.dcd

test/unittests/cpmd_4.1/md/dcd/TRAJECTORY

test/unittests/cpmd_4.1/md/dcd/input.inp

test/unittests/cpmd_4.1/md/dcd/output.out

test/unittests/cpmd_4.1/md/nve/ENERGIES

test/unittests/cpmd_4.1/md/nve/GEOMETRY

test/unittests/cpmd_4.1/md/nve/GEOMETRY.xyz

test/unittests/cpmd_4.1/md/nve/RESTART.1

test/unittests/cpmd_4.1/md/nve/TRAJEC.xyz

test/unittests/cpmd_4.1/md/nve/TRAJECTORY

test/unittests/cpmd_4.1/md/nve/input.inp

test/unittests/cpmd_4.1/md/nve/output.out

test/unittests/cpmd_4.1/md/trajectory/ENERGIES

test/unittests/cpmd_4.1/md/trajectory/GEOMETRY