Started parsing MD runs.

parser/parser-cpmd/cpmdparser/parser.py

...er/parser-cpmd/cpmdparser/versions/cpmd41/commonparser.py

...er/parser-cpmd/cpmdparser/versions/cpmd41/geooptparser.py

parser/parser-cpmd/cpmdparser/versions/cpmd41/mdparser.py

src/main/scala/eu/nomad_lab/parsers/CpmdParser.scala

src/test/scala/eu/nomad_lab/parsers/CpmdParserSpec.scala

test/examples/md/ENERGIES

test/examples/md/GEOMETRY

test/examples/md/GEOMETRY.xyz

test/examples/md/LATEST

test/examples/md/RESTART.1

test/examples/md/TRAJEC.xyz

test/examples/md/TRAJECTORY

test/examples/md/input.inp

test/examples/md/output.out

test/examples/md/run.sh

test/unittests/cpmd_4.1/md/dcd/ENERGIES

test/unittests/cpmd_4.1/md/dcd/GEOMETRY

test/unittests/cpmd_4.1/md/dcd/GEOMETRY.xyz

test/unittests/cpmd_4.1/md/dcd/LATEST