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Draft: remove owner key from the query

Closed Draft: remove owner key from the query
encyclopedia-cleanup into master
Closed Lauri Himanen requested to merge encyclopedia-cleanup into master
  • All the functionality of the EncyclopediaNormalizer is now integrated into ResultsNormalizer.
  • Updated materia to support visualizing 2D and 1D cells that may have zero-length basis vectors. With this update, the overview page now also shows the conventional/primitive cell for 1D and 2D systems.
  • Fixed issue with the ordering of basis vectors for conventional/primitive 1D and 2D structures. Now the order is fixed so that the periodic bases always come first.
  • Migrated test_encyclopedia.py into test_material.py, test_method.py and test_properties.py. together with a few new tests.
  • Removed the Encyclopedia GUI image dependency and docker build phase.
  • Removed most Encyclopedia related config from nginx, helm and config.py. The only remaining config is encyclopediaEnabled, which activates/deactivates links to the material search and material-related links.
  • Fixed issue where the optional nmd-prefixed Optimade data was not accepting data with unit information (ureg.Quantity) and was failiing when trying to serialize data set to None.

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  • Lauri Himanen added 1 commit

    added 1 commit

    • 7a08dc9d - Changed encyclopediaEnabled to encyclopediaBase throughout the config.

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  • Lauri Himanen added 55 commits

    added 55 commits

    • faad3be7 - Added reprocess parameter to use old parser match.
    • ec71cb65 - Added legacy outcar parser name.
    • 0428a7a5 - Added test for parse name during mongo migration.
    • f05eba07 - Fixed nomad admin uploads CLI filter parameters after mongo refactor.
    • e248c20b - Refactored (re-)processing configuration.
    • 76187fcc - Fixed index error on emptry site positions. Index minimal entry after processing failure.
    • e9166be3 - Use default value if deriving a value fails.
    • 0186f4f4 - Lowered severity of missing representative system to warning.
    • cbf820f9 - Ensure logical end between admin uploads cli filters.
    • 143515ed - Configurable elastic timeout.
    • d319240c - Ensure parser information on all Calc loggers.
    • 2ca88657 - Optimized es indexing during re-processing. #654 (closed)
    • 6764e6bc - Added exec times logging for index operations.
    • e3f99fa1 - Fixed functionals collection in results normalizer. #654 (closed)
    • b18de659 - Added more logs and configurability to es indexing. #654 (closed)
    • 0ff90e91 - Fixed incorrect materials count on terms aggregations. #609 (closed)
    • a3a0b024 - Merge branch 'v1-aggregation-counts' into 'v1.0.0'
    • aef150fb - Check the entry_id of the selected row
    • b86971d1 - Check the key of the shown column
    • f13dc7ce - Fix a bug
    • c61e013d - Base functionality of new edit api
    • 5abe5bcf - Fixed handling time stamps and test cases for admin attributes
    • 952694ad - Adding uploads endpoint and tests, restructuring
    • a85cf18a - Adding support for queries
    • a566588e - Rename api endpoint entries/edit -> entries/edit_old
    • c2c6d1e8 - Adding new endpoint entries/edit and tests
    • 39b7e362 - Merge branch 'UploadPage_EntrySelection' into 'v1.0.0'
    • 08253e66 - Revised exception handling and adjustments suggested by Markus
    • f782e11e - Merge branch 'new-edit-api' into 'v1.0.0'
    • 9a78848f - Adding code for migrating DOI and fixing missing dataset refs
    • 8b6cd211 - Enabled exclude_from_search for non trivial queries. #661 (closed)
    • 3d8ea2d9 - Optimize exclude_from_search. #661 (closed)
    • 8789e7d7 - Merge branch 'v1-process' into 'v1.0.0'
    • 928f5af8 - Merge branch 'v1-exclude-from-search' into 'v1.0.0'
    • 6704581c - Adding options upload-update and entry-update
    • ed165b07 - Introducing new option
    • 3b4beaf3 - Added separate upload-query and entry-query options
    • 8238c1b3 - Merge branch 'improved-migrate-cli' into 'v1.0.0'
    • ef350314 - Removed the encyclopedia GUI dependency.
    • a7d80d77 - Removed the Encyclopedia GUI build steps from the dockerfile.
    • ac0f1b0b - Removed Encyclopedia routes from nginx configs.
    • 5489cbc0 - Started out removing encyclopedia normalization.
    • 5aedd447 - Merged the Encyclopedia method normalization and Results method normalization...
    • e4e81156 - Merged parts of encyclopedia material normalization into results normalizer,...
    • b7387b56 - More normalization now migrated to ResultsNormalizer.
    • cce83870 - Added support for angle units.
    • 524389c4 - Fixed issues with using empty atomic numbers list, fixed GUI test that was...
    • d50a14aa - Updated the materia-library, fixed issue with normalizing systems that do not have any structures.
    • 158e5a8b - Updated the materia-library.
    • e1eb32d7 - Added the remaining ID's to ResultsNormalizer, removed EncyclopediaNormalizer and tests.
    • 350c488f - Fixed issues with handling missing data.
    • fc8b94dd - Fixed issues in structure normalization.
    • ae2d4143 - Fixed issue with conventional cell basis vector ordering, added new test case.
    • fc94d375 - Fixed issue in serializing optional NOMAD data into an Optimade entry.
    • f71d9cc0 - Changed encyclopediaEnabled to encyclopediaBase throughout the config.

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  • Lauri Himanen added 1 commit

    added 1 commit

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  • Lauri Himanen closed

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