Changelog: Changed

Changelog: Added

Changelog: Added

Fixed typos and some language in the plugin docs.

Updated docs and scripts.

Improve integration and update DOS comparison to use the integral metric instead of the mean for robustness.

* removing `env.js` from the repository
* removing `matid` dependency form the parser packages
* converting python dependency check job into manual job

- switching to `pyproject.toml` for the python setup process [PEP 621](https://peps.python.org/pep-0621/)
- storing gui artifacts to avoid cyclic dependency
- using dynamic version based the git status using [setuptools-scm](https://pypi.org/project/setuptools-scm/)
- fix python pacakge conflicts by using [pip-tools](https://github.com/jazzband/pip-tools)
- Multi stage docker build  
- CI/CD: switching to the built image for testing
- cleanup refactoring (`.gitignore`, `MANIFEST.in`, `scripts`, etc.)

Refactored the setup.py. Using compiled arguments from deps, layers of extras. Some import refactoring to make the extra layers work.