Reformatted file

deepof_experiments.smk

@@ -22,7 +22,7 @@ rule deepof_experiments:
     input:
         expand(
             "/u/lucasmir/DLC/DLC_autoencoders/DeepOF/deepof/logs/dimension_and_loss_experiments/trained_weights/\
-            GMVAE_loss={loss}_encoding={encs}_final_weights.h5",
+                    GMVAE_loss={loss}_encoding={encs}_final_weights.h5",
             loss=losses,
             encs=encodings,
         ),
@@ -38,10 +38,10 @@ rule explore_encoding_dimension_and_loss_function:
         ),
     shell:
         "pipenv run python -m deepof.train_model --train-path {input.data_path} --val-num 10 --components 10 \
-        --input-type coords --predictor 0 --variational True --loss {wildcards.loss} --kl-warmup 20 --mmd-warmup 20 \
-        --encoding-size {wildcards.encs} --batch-size 256 --window-size 11 --window-step 11 --exclude-bodyparts \
-        Tail_base,Tail_1,Tail_2,Tail_tip,Spine_2 --stability-check 3 --out-path \
-        {}dimension_and_loss_experiments/trained_weights".format(
+                --input-type coords --predictor 0 --variational True --loss {wildcards.loss} --kl-warmup 20 --mmd-warmup 20 \
+                --encoding-size {wildcards.encs} --batch-size 256 --window-size 11 --window-step 11 --exclude-bodyparts \
+                Tail_base,Tail_1,Tail_2,Tail_tip,Spine_2 --stability-check 3 --out-path \
+                {}dimension_and_loss_experiments/trained_weights".format(
             outpath
         )