Add `install_requires` to `setup.cfg` to fix #1. Add dummy `setup.py`.

Remove unneeded `mpi4py` requirement.
Rename `test` -> `tests` and update `.gitlab-ci.yml`.

.gitlab-ci.yml

@@ -45,8 +45,8 @@ pages:
     # - apt-get -qq insall -y texlive-latex-recommended texlive-fonts-recommended tex-gyre texlive-latex-extra latexmk texlive-lang-cyrillic texlive-lang-greek cm-super texlive-xetex texlive-luatex fonts-freefont-otf xindy graphviz
     - python -m venv ipp-env
     - source ipp-env/bin/activate
-    - pip install -U pip build wheel pytest coverage
-    - pip install -r requirements.txt
+    - pip install -U pip build wheel pytest coverage sphinx sphinx_rtd_theme
+    # - pip install -r requirements.txt
 
     # Print directory structure, but exclude virtual environment directory.
     - tree -I 'ipp-env' 
@@ -63,12 +63,12 @@ pages:
     # - make latexpdf LATEXMKOPTS="-xelatex -silent"
     # - cd ..
 
-    # Build: make pyccel, build python package, install package.
+    # Build: build python package, install package.
     - echo "Run python build:"
     - python -m build
     - ls -lah dist
     - echo "Install dist:"
-    - pip install -U dist/gvec_to_python-*.whl --force-reinstall
+    - pip install -U dist/gvec_to_python-*.whl # --force-reinstall
 
     # Test: run pytest and coverage report.
     - echo "Run pytest and coverage report:"

build_and_test.sh

@@ -16,7 +16,7 @@ echo "Run python build:"
 python -m build
 ls -lah dist
 echo "Install dist:"
-pip install -U dist/gvec_to_python-*.whl --force-reinstall
+pip install -U dist/gvec_to_python-*.whl # --force-reinstall
 
 # Test: run pytest.
 echo "Run pytest:"

requirements.txt

 h5py>=3.3.0
 matplotlib>=3.3.3
-mpi4py>=3.0.3
 numba>=0.53.1
 numpy>=1.19.5
 pandas>=1.2.1

setup.cfg

@@ -6,6 +6,7 @@ author_email = tinkei.cheng@tum.de
 description = Converts GVEC output to STRUPHY input
 long_description = file: README.md
 long_description_content_type = text/markdown
+keywords = plasma, mhd, equilibrium, discrete differential forms, gvec
 url = https://gitlab.mpcdf.mpg.de/spossann/gvec_to_python
 project_urls =
     Bug Tracker = https://gitlab.mpcdf.mpg.de/spossann/gvec_to_python/-/issues
@@ -19,6 +20,21 @@ package_dir =
     = src
 packages = find:
 python_requires = >=3.6
+install_requires =
+    h5py>=3.3.0
+    matplotlib>=3.3.3
+    numba>=0.53.1
+    numpy>=1.19.5
+    pandas>=1.2.1
+    psutil>=5.8.0
+    pytz>=2021.1
+    regex>=2021.8.3
+    scipy>=1.6.0
+    sphinx>=4.2.0
+    sphinx_rtd_theme>=1.0.0
+    tqdm>=4.56.0
+    vtk>=9.0.3
+
 
 [options.packages.find]
 where = src

setup.py

+from setuptools import setup, find_packages
+
+if __name__ == "__main__":
+
+    setup(
+        # name="gvec_to_python",
+        # version="0.1.2",
+        # packages=find_packages(),
+        # install_requires=[
+        #     'h5py>=3.3.0'
+        #     'matplotlib>=3.3.3'
+        #     'numba>=0.53.1'
+        #     'numpy>=1.19.5'
+        #     'pandas>=1.2.1'
+        #     'psutil>=5.8.0'
+        #     'pytz>=2021.1'
+        #     'regex>=2021.8.3'
+        #     'scipy>=1.6.0'
+        #     'sphinx>=4.2.0'
+        #     'sphinx_rtd_theme>=1.0.0'
+        #     'tqdm>=4.56.0'
+        #     'vtk>=9.0.3'
+        # ],
+        # author="Tin Kei Cheng",
+        # author_email="tinkei.cheng@tum.de",
+        # description="",
+        # license="",
+        # keywords="plasma, mhd, equilibrium, discrete differential forms, gvec",
+        # url="https://gitlab.mpcdf.mpg.de/spossann/gvec_to_python",
+    )

test/__init__.py → tests/__init__.py

 # Specify __all__ variable to enable `from gvec_to_python import *`.
 # Source: https://docs.python.org/3/tutorial/modules.html#importing-from-a-package
 __all__ = [
-    'test_greville_and_element_boundaries', 
-    'test_iota_eq_dchi_dphi', 
-    'test_paraview', 
-    ]
+    'test_greville_and_element_boundaries',
+    'test_GVEC_class',
+    'test_gvec_spline',
+    'test_implementations_of_dphi',
+    'test_iota_eq_dchi_dphi',
+    'test_nested_maps_and_jacobians_with_meshgrid',
+    'test_paraview',
+]