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connectomics
apicalTuftPaper
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master
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sepia
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Created with Raphaël 2.2.0
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Sepia isosurface
sepia
sepia
AD reinnervation script
master
master
Writing to ply files
Example surface extraction from volume annotations
Surfaces: auxiliary function update
Update the WKW functions from the WKW repository
Merge branch 'alik-master-patch-28276' into 'master'
publication
publication
Update README.md
Merge branch 'master' of gitlab.mpcdf.mpg.de:connectomics/apicaltuftpaper
Update: somatic depth table (table 5) in supplementary material
Remove rdir and its use cases
+Figure scripts tested in windows 10, MATLAB 2019a. The unnecessary output to command window suppressed
Write the excel sheet for Distal AD results
Supplementary Fig. 7 checked
Done with main Fig. 7
Figure 7A and SupplA script cleanup
Fig. 6C is done as well
Added the excel sheet for synapse densities/fractions
Add excel sheet
Fig.6AB is done
Cleanup of the Fig. 5E script
Change function name
Fix the initial set-up of the rest of the scripts before focusing on Fig. 5E
Fig. 5f: Spine density script cleaned up
Correct the figure sizes to update Fig. 5f
Update The excel sheet names
Added excel sheet of raw data
The L5 subtype classification for Fig. 5BCF script cleaned up
Wrote the excel sheet related to L5 subtype classification
Move away deprecated script
Documentation of L5 subtype analysis
L5A-->L5 package name change
The AD trunk diameter measurement for L5 neurons
Added Doc
Bring back the PPC-2 annotations with old L5 grouping used in the Fig. 5. Necessary since AD and soma diameter measurements are done in the old grouping of L5 neurons
Document and cleanup the gallery functions for plotting ADs in Fig. 5A
Cleanup
Fix the directory of L1 and Pia surface matfiles for the PPC-2 dataset
Add description about SEM
Script for the fraction of AD innervation (only considering AD innervation)
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