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Created with Raphaël 2.2.024Apr22Jun19147Apr432131Mar3029282726252322212019181716131211228Feb2726171313Jan728Dec151413765330Nov9528Oct2516151432130Sep2927262517141311108765432130Aug2928272614131287652131Jul301514121195328Jun27252417121018Apr12812Feb26Jan421DecSepia isosurfacesepiasepiaAD reinnervation scriptmastermasterWriting to ply filesExample surface extraction from volume annotationsSurfaces: auxiliary function updateUpdate the WKW functions from the WKW repositoryMerge branch 'alik-master-patch-28276' into 'master'publicationpublicationUpdate README.mdMerge branch 'master' of gitlab.mpcdf.mpg.de:connectomics/apicaltuftpaperUpdate: somatic depth table (table 5) in supplementary materialRemove rdir and its use cases+Figure scripts tested in windows 10, MATLAB 2019a. The unnecessary output to command window suppressedWrite the excel sheet for Distal AD resultsSupplementary Fig. 7 checkedDone with main Fig. 7Figure 7A and SupplA script cleanupFig. 6C is done as wellAdded the excel sheet for synapse densities/fractionsAdd excel sheetFig.6AB is doneCleanup of the Fig. 5E scriptChange function nameFix the initial set-up of the rest of the scripts before focusing on Fig. 5EFig. 5f: Spine density script cleaned upCorrect the figure sizes to update Fig. 5fUpdate The excel sheet namesAdded excel sheet of raw dataThe L5 subtype classification for Fig. 5BCF script cleaned upWrote the excel sheet related to L5 subtype classificationMove away deprecated scriptDocumentation of L5 subtype analysisL5A-->L5 package name changeThe AD trunk diameter measurement for L5 neuronsAdded DocBring back the PPC-2 annotations with old L5 grouping used in the Fig. 5. Necessary since AD and soma diameter measurements are done in the old grouping of L5 neuronsDocument and cleanup the gallery functions for plotting ADs in Fig. 5ACleanupFix the directory of L1 and Pia surface matfiles for the PPC-2 datasetAdd description about SEMScript for the fraction of AD innervation (only considering AD innervation)
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