... | ... | @@ -10,4 +10,11 @@ There are two types of model file formats that are read by BioEM: |
|
|
2. *PDB file*: the C-alpha atom positions with their corresponding residue type from standard pdb files. The required commandline keyword is
|
|
|
- --ReadPDB
|
|
|
|
|
|
|
|
|
\ No newline at end of file |
|
|
### Particle file
|
|
|
The name of the experimental particle-image file is passed to the BioEM executable using the commandline:
|
|
|
- --Particlesfile *arg*
|
|
|
where *arg* is the particle-image filename.
|
|
|
There are two types of particle file formats that are read by BioEM:
|
|
|
1. **Default** *Text file*: Data are formatted as ”%8d%8d%16.8f” where the first two columns are the pixel indexes, and the third column is the intensity at that pixel. Multiple particles are read in the same file with the separator "PARTICLE". Pixel indexes should start at 0, and all pixels should be included.
|
|
|
2. *.mrc file*: BioEM also reads standard .mrc particle-image files. To do so, the additional commandline keyword is needed:
|
|
|
- --ReadMRC |
|
|
\ No newline at end of file |