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- --Modelfile *arg*
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where *arg* is the model filename.
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There are two types of model file formats that are read by BioEM:
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1. **Default** *Text file*: with format ”%f %f %f %f %f”. The first three columns are the coordinates of the sphere centers in ångström, the fourth column is the radius in ångström, and the last column is the corresponding number of electrons. (Format: x --- y --- z --- radius --- number electrons ).
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2. *PDB file*: the C-alpha atom positions with their corresponding residue type from standard pdb files. The required commandline keyword is
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