always gather match statistics

common/python/nomadcore/annotator.py

@@ -41,8 +41,6 @@ class Annotator(object):
         self._update_annotate_format()
 
     def annotate(self, match, line, matcher, targetStartEnd):
-        if not self.annotateFile:
-            return 1
         # classify match
         full = match and match.start() == 0 and match.end() == len(line)
         local_ignore = False
@@ -76,6 +74,10 @@ class Annotator(object):
         else:
             self.counter['unmatched'] += 1
 
+        # don't write to file unless it is there
+        if not self.annotateFile:
+            return 1
+
         # setup match label
         matchlabel = ''
         if local_ignore: