Skip to content
Snippets Groups Projects
Commit e3a0ab05 authored by Markus Scheidgen's avatar Markus Scheidgen
Browse files

Added metainfo python code.

parent a8b323f8
No related branches found
No related tags found
No related merge requests found
import sys
from nomad.metainfo import Environment
from nomad.metainfo.legacy import LegacyMetainfoEnvironment
import cpmdparser.metainfo.cpmd
import cpmdparser.metainfo.cpmd_general
import nomad.datamodel.metainfo.common
import nomad.datamodel.metainfo.public
import nomad.datamodel.metainfo.general
m_env = LegacyMetainfoEnvironment()
m_env.m_add_sub_section(Environment.packages, sys.modules['cpmdparser.metainfo.cpmd'].m_package) # type: ignore
m_env.m_add_sub_section(Environment.packages, sys.modules['cpmdparser.metainfo.cpmd_general'].m_package) # type: ignore
m_env.m_add_sub_section(Environment.packages, sys.modules['nomad.datamodel.metainfo.common'].m_package) # type: ignore
m_env.m_add_sub_section(Environment.packages, sys.modules['nomad.datamodel.metainfo.public'].m_package) # type: ignore
m_env.m_add_sub_section(Environment.packages, sys.modules['nomad.datamodel.metainfo.general'].m_package) # type: ignore
This diff is collapsed.
This diff is collapsed.
...@@ -208,7 +208,7 @@ class CPMDMDParser(MainHierarchicalParser): ...@@ -208,7 +208,7 @@ class CPMDMDParser(MainHierarchicalParser):
self.backend.addArrayValues("atom_velocities", velocities, unit="bohr/(hbar/hartree)") self.backend.addArrayValues("atom_velocities", velocities, unit="bohr/(hbar/hartree)")
forces = values[:, 7:10] forces = values[:, 7:10]
self.backend.addArrayValues("atom_forces", forces, unit="forceAu") self.backend.addArrayValues("atom_forces", forces, unit="hartree / bohr")
if trajec_file_iterator is None: if trajec_file_iterator is None:
pos = values[:, 1:4] pos = values[:, 1:4]
... ...
......
...@@ -474,14 +474,14 @@ class TestMD(unittest.TestCase): ...@@ -474,14 +474,14 @@ class TestMD(unittest.TestCase):
[0.15293653991241, -0.00036559789218, -0.00039617900820], [0.15293653991241, -0.00036559789218, -0.00039617900820],
[-0.15293653991238, 0.00036559789217, 0.00039617900820], [-0.15293653991238, 0.00036559789217, 0.00039617900820],
]), ]),
"forceAu" "hartree / bohr"
) )
expected_end = convert_unit( expected_end = convert_unit(
np.array([ np.array([
[-0.03595092814462, -0.00079338139843, -0.00085974499854], [-0.03595092814462, -0.00079338139843, -0.00085974499854],
[0.03595092814462, 0.00079338139843, 0.00085974499854], [0.03595092814462, 0.00079338139843, 0.00085974499854],
]), ]),
"forceAu" "hartree / bohr"
) )
self.assertTrue(np.array_equal(result[0, :], expected_start)) self.assertTrue(np.array_equal(result[0, :], expected_start))
... ...
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please to comment