Updated the setuptools settings and README.

README.md

@@ -63,6 +63,15 @@ folder *cp2k/test/unittests*. Here is an example of the call syntax:
     mpl.show()
 ```
 
+To install this standalone version, you need to clone the repositories
+"python-common", "nomad-meta-info", and "parser-cp2k" into the same folder.
+Then install the python-common according to the instructions found in the
+README. After that, you can install this package by running:
+
+```sh
+python setup.py develop --user
+```
+
 # Tools and Methods
 This section describes some of the guidelines that are used in the development
 of this parser.

parser/parser-cp2k/cp2kparser/parser.py

@@ -15,8 +15,8 @@ class CP2KParser(ParserInterface):
     After the implementation has been setup, you can parse the files with
     parse().
     """
-    def __init__(self, main_file, metainfo_to_keep=None, backend=None, default_units=None, metainfo_units=None):
-        super(CP2KParser, self).__init__(main_file, metainfo_to_keep, backend, default_units, metainfo_units)
+    def __init__(self, main_file, metainfo_to_keep=None, backend=None, default_units=None, metainfo_units=None, debug=True, store=True):
+        super(CP2KParser, self).__init__(main_file, metainfo_to_keep, backend, default_units, metainfo_units, debug, store)
 
     def setup_version(self):
         """Setups the version by looking at the output file and the version

parser/parser-cp2k/setup.py → setup.py

@@ -11,7 +11,6 @@ def main():
     setup(
         name="cp2kparser",
         version="0.1",
-        include_package_data=True,
         package_data={
             'cp2kparser.versions.cp2k262': ['input_data/cp2k_input_tree.pickle'],
         },
@@ -19,6 +18,7 @@ def main():
         author="Lauri Himanen",
         author_email="lauri.himanen@aalto.fi",
         license="GPL3",
+        package_dir={'': 'parser/parser-cp2k'},
         packages=find_packages(),
         install_requires=[
             'pint',
@@ -26,7 +26,6 @@ def main():
             'mdtraj',
             'ase'
         ],
-        zip_safe=False
     )
 
 # Run main function by default