Initial commit with full parser code.

README.md

parser/parser-charmm/CHARMMCommon.py

parser/parser-charmm/CHARMMDictionary.py

parser/parser-charmm/CHARMMParser.py

parser/parser-charmm/setup_paths.py

src/main/scala/eu/nomad_lab/parsers/CHARMMParser.scala

src/test/scala/eu/nomad_lab/parsers/CHARMMParserSpec.scala

test/examples/README.md

test/examples/brbtest/brbtest.crd

test/examples/brbtest/brbtest.inp

test/examples/brbtest/brbtest.out

test/examples/brbtest/datadir.def

test/examples/brbtest/param3.prm

test/examples/brbtest/qtest.str

test/examples/brbtest/test.str

test/examples/brbtest/toph8.rtf

test/examples/dyntest1/.dyntest1.out.swp

test/examples/dyntest1/datadir.def

test/examples/dyntest1/dyntest1.crd

test/examples/dyntest1/dyntest1.inp