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Commit 38d58bcb authored by Daniel Speckhard's avatar Daniel Speckhard
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Removed scala files.

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bigdftparser/scalainterface.py deleted 100644 → 0
View file @ f89b3269
# Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This is the access point to the parser for the scala layer in the
nomad project.
"""
from __future__ import absolute_import
import sys
import setup_paths
from nomadcore.parser_backend import JsonParseEventsWriterBackend
from bigdftparser import BigDFTParser
if __name__ == "__main__":
# Initialise the parser with the main filename and a JSON backend
main_file = sys.argv[1]
parser = BigDFTParser(backend=JsonParseEventsWriterBackend)
parser.parse(main_file)
bigdftparser/setup_paths.py deleted 100644 → 0
View file @ f89b3269
# Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Setups the python-common library in the PYTHONPATH system variable.
"""
import sys
import os
import os.path
baseDir = os.path.dirname(os.path.abspath(__file__))
commonDir = os.path.normpath(os.path.join(baseDir, "../../../../../python-common/common/python"))
parserDir = os.path.normpath(os.path.join(baseDir, "../../parser-big-dft"))
# Using sys.path.insert(1, ...) instead of sys.path.insert(0, ...) based on
# this discusssion:
# http://stackoverflow.com/questions/10095037/why-use-sys-path-appendpath-instead-of-sys-path-insert1-path
if commonDir not in sys.path:
sys.path.insert(1, commonDir)
sys.path.insert(1, parserDir)
src/main/scala/eu/nomad_lab/parsers/BigDFTParser.scala deleted 100644 → 0
View file @ f89b3269
/*
* Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package eu.nomad_lab.parsers
import eu.{ nomad_lab => lab }
import eu.nomad_lab.DefaultPythonInterpreter
import org.{ json4s => jn }
import scala.collection.breakOut
object BigDFTParser extends SimpleExternalParserGenerator(
name = "BigDFTParser",
parserInfo = jn.JObject(
("name" -> jn.JString("BigDFTParser")) ::
("parserId" -> jn.JString("BigDFTParser" + lab.BigdftVersionInfo.version)) ::
("versionInfo" -> jn.JObject(
("nomadCoreVersion" -> jn.JObject(lab.NomadCoreVersionInfo.toMap.map {
case (k, v) => k -> jn.JString(v.toString)
}(breakOut): List[(String, jn.JString)])) ::
(lab.BigdftVersionInfo.toMap.map {
case (key, value) =>
(key -> jn.JString(value.toString))
}(breakOut): List[(String, jn.JString)])
)) :: Nil
),
mainFileTypes = Seq("text/.*"),
mainFileRe = """__________________________________ A fast and precise DFT wavelet code\s*
\| \| \| \| \| \|\s*
\| \| \| \| \| \| BBBB i gggggg\s*
\|_____\|_____\|_____\|_____\|_____\| B B g\s*
\| \| : \| : \| \| \| B B i g\s*
\| \|-0\+--\|-0\+--\| \| \| B B i g g\s*
\|_____\|__:__\|__:__\|_____\|_____\|___ BBBBB i g g\s*
\| : \| \| \| : \| \| B B i g g\s*
\|--\+0-\| \| \|-0\+--\| \| B B iiii g g\s*
\|__:__\|_____\|_____\|__:__\|_____\| B B i g g\s*
\| \| : \| : \| \| \| B BBBB i g g\s*
\| \|-0\+--\|-0\+--\| \| \| B iiiii gggggg\s*
\|_____\|__:__\|__:__\|_____\|_____\|__BBBBB\s*
\| \| \| \| : \| \| TTTTTTTTT\s*
\| \| \| \|--\+0-\| \| DDDDDD FFFFF T\s*
\|_____\|_____\|_____\|__:__\|_____\| D D F TTTT T\s*
\| \| \| \| : \| \|D D F T T\s*
\| \| \| \|--\+0-\| \|D D FFFF T T\s*
\|_____\|_____\|_____\|__:__\|_____\|D___ D F T T\s*
\| \| \| : \| \| \|D D F TTTTT\s*
\| \| \|--\+0-\| \| \| D D F T T\s*
\|_____\|_____\|__:__\|_____\|_____\| D F T T\s*
\| \| \| \| \| \| D T T\s*
\| \| \| \| \| \| DDDDDD F TTTT\s*
\|_____\|_____\|_____\|_____\|_____\|______ www\.bigdft\.org""".r,
cmd = Seq(DefaultPythonInterpreter.pythonExe(), "${envDir}/parsers/big-dft/parser/parser-big-dft/bigdftparser/scalainterface.py",
"${mainFilePath}"),
cmdCwd = "${mainFilePath}/..",
resList = Seq(
"parser-big-dft/bigdftparser/__init__.py",
"parser-big-dft/bigdftparser/setup_paths.py",
"parser-big-dft/bigdftparser/parser.py",
"parser-big-dft/bigdftparser/scalainterface.py",
"parser-big-dft/bigdftparser/versions/__init__.py",
"parser-big-dft/bigdftparser/versions/bigdft18/__init__.py",
"parser-big-dft/bigdftparser/versions/bigdft18/mainparser.py",
"parser-big-dft/bigdftparser/generic/__init__.py",
"parser-big-dft/bigdftparser/generic/libxc_codes.py",
"nomad_meta_info/public.nomadmetainfo.json",
"nomad_meta_info/common.nomadmetainfo.json",
"nomad_meta_info/meta_types.nomadmetainfo.json",
"nomad_meta_info/big_dft.nomadmetainfo.json"
) ++ DefaultPythonInterpreter.commonFiles(),
dirMap = Map(
"parser-big-dft" -> "parsers/big-dft/parser/parser-big-dft",
"nomad_meta_info" -> "nomad-meta-info/meta_info/nomad_meta_info"
) ++ DefaultPythonInterpreter.commonDirMapping()
)
src/test/scala/eu/nomad_lab/parsers/BigDFTParserSpec.scala deleted 100644 → 0
View file @ f89b3269
/*
* Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package eu.nomad_lab.parsers
import org.specs2.mutable.Specification
object BigDFTParserSpec extends Specification {
"BigDFTParserTest" >> {
"test with json-events" >> {
ParserRun.parse(BigDFTParser, "parsers/big-dft/test/examples/single_point/output.out", "json-events") must_== ParseResult.ParseSuccess
}
}
"test single_point with json" >> {
ParserRun.parse(BigDFTParser, "parsers/big-dft/test/examples/single_point/output.out", "json") must_== ParseResult.ParseSuccess
}
}
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