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nomad-lab
parser-big-dft
Commits
38d58bcb
Commit
38d58bcb
authored
Feb 05, 2019
by
Daniel Speckhard
Browse files
Removed scala files.
parent
f89b3269
Changes
4
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Inline
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bigdftparser/scalainterface.py
deleted
100644 → 0
View file @
f89b3269
# Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This is the access point to the parser for the scala layer in the
nomad project.
"""
from
__future__
import
absolute_import
import
sys
import
setup_paths
from
nomadcore.parser_backend
import
JsonParseEventsWriterBackend
from
bigdftparser
import
BigDFTParser
if
__name__
==
"__main__"
:
# Initialise the parser with the main filename and a JSON backend
main_file
=
sys
.
argv
[
1
]
parser
=
BigDFTParser
(
backend
=
JsonParseEventsWriterBackend
)
parser
.
parse
(
main_file
)
bigdftparser/setup_paths.py
deleted
100644 → 0
View file @
f89b3269
# Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Setups the python-common library in the PYTHONPATH system variable.
"""
import
sys
import
os
import
os.path
baseDir
=
os
.
path
.
dirname
(
os
.
path
.
abspath
(
__file__
))
commonDir
=
os
.
path
.
normpath
(
os
.
path
.
join
(
baseDir
,
"../../../../../python-common/common/python"
))
parserDir
=
os
.
path
.
normpath
(
os
.
path
.
join
(
baseDir
,
"../../parser-big-dft"
))
# Using sys.path.insert(1, ...) instead of sys.path.insert(0, ...) based on
# this discusssion:
# http://stackoverflow.com/questions/10095037/why-use-sys-path-appendpath-instead-of-sys-path-insert1-path
if
commonDir
not
in
sys
.
path
:
sys
.
path
.
insert
(
1
,
commonDir
)
sys
.
path
.
insert
(
1
,
parserDir
)
src/main/scala/eu/nomad_lab/parsers/BigDFTParser.scala
deleted
100644 → 0
View file @
f89b3269
/*
* Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package
eu.nomad_lab.parsers
import
eu.
{
nomad_lab
=>
lab
}
import
eu.nomad_lab.DefaultPythonInterpreter
import
org.
{
json4s
=>
jn
}
import
scala.collection.breakOut
object
BigDFTParser
extends
SimpleExternalParserGenerator
(
name
=
"BigDFTParser"
,
parserInfo
=
jn
.
JObject
(
(
"name"
->
jn
.
JString
(
"BigDFTParser"
))
::
(
"parserId"
->
jn
.
JString
(
"BigDFTParser"
+
lab
.
BigdftVersionInfo
.
version
))
::
(
"versionInfo"
->
jn
.
JObject
(
(
"nomadCoreVersion"
->
jn
.
JObject
(
lab
.
NomadCoreVersionInfo
.
toMap
.
map
{
case
(
k
,
v
)
=>
k
->
jn
.
JString
(
v
.
toString
)
}(
breakOut
)
:
List
[(
String
,
jn.JString
)]))
::
(
lab
.
BigdftVersionInfo
.
toMap
.
map
{
case
(
key
,
value
)
=>
(
key
->
jn
.
JString
(
value
.
toString
))
}(
breakOut
)
:
List
[(
String
,
jn.JString
)])
))
::
Nil
),
mainFileTypes
=
Seq
(
"text/.*"
),
mainFileRe
=
"""__________________________________ A fast and precise DFT wavelet code\s*
\| \| \| \| \| \|\s*
\| \| \| \| \| \| BBBB i gggggg\s*
\|_____\|_____\|_____\|_____\|_____\| B B g\s*
\| \| : \| : \| \| \| B B i g\s*
\| \|-0\+--\|-0\+--\| \| \| B B i g g\s*
\|_____\|__:__\|__:__\|_____\|_____\|___ BBBBB i g g\s*
\| : \| \| \| : \| \| B B i g g\s*
\|--\+0-\| \| \|-0\+--\| \| B B iiii g g\s*
\|__:__\|_____\|_____\|__:__\|_____\| B B i g g\s*
\| \| : \| : \| \| \| B BBBB i g g\s*
\| \|-0\+--\|-0\+--\| \| \| B iiiii gggggg\s*
\|_____\|__:__\|__:__\|_____\|_____\|__BBBBB\s*
\| \| \| \| : \| \| TTTTTTTTT\s*
\| \| \| \|--\+0-\| \| DDDDDD FFFFF T\s*
\|_____\|_____\|_____\|__:__\|_____\| D D F TTTT T\s*
\| \| \| \| : \| \|D D F T T\s*
\| \| \| \|--\+0-\| \|D D FFFF T T\s*
\|_____\|_____\|_____\|__:__\|_____\|D___ D F T T\s*
\| \| \| : \| \| \|D D F TTTTT\s*
\| \| \|--\+0-\| \| \| D D F T T\s*
\|_____\|_____\|__:__\|_____\|_____\| D F T T\s*
\| \| \| \| \| \| D T T\s*
\| \| \| \| \| \| DDDDDD F TTTT\s*
\|_____\|_____\|_____\|_____\|_____\|______ www\.bigdft\.org"""
.
r
,
cmd
=
Seq
(
DefaultPythonInterpreter
.
pythonExe
(),
"${envDir}/parsers/big-dft/parser/parser-big-dft/bigdftparser/scalainterface.py"
,
"${mainFilePath}"
),
cmdCwd
=
"${mainFilePath}/.."
,
resList
=
Seq
(
"parser-big-dft/bigdftparser/__init__.py"
,
"parser-big-dft/bigdftparser/setup_paths.py"
,
"parser-big-dft/bigdftparser/parser.py"
,
"parser-big-dft/bigdftparser/scalainterface.py"
,
"parser-big-dft/bigdftparser/versions/__init__.py"
,
"parser-big-dft/bigdftparser/versions/bigdft18/__init__.py"
,
"parser-big-dft/bigdftparser/versions/bigdft18/mainparser.py"
,
"parser-big-dft/bigdftparser/generic/__init__.py"
,
"parser-big-dft/bigdftparser/generic/libxc_codes.py"
,
"nomad_meta_info/public.nomadmetainfo.json"
,
"nomad_meta_info/common.nomadmetainfo.json"
,
"nomad_meta_info/meta_types.nomadmetainfo.json"
,
"nomad_meta_info/big_dft.nomadmetainfo.json"
)
++
DefaultPythonInterpreter
.
commonFiles
(),
dirMap
=
Map
(
"parser-big-dft"
->
"parsers/big-dft/parser/parser-big-dft"
,
"nomad_meta_info"
->
"nomad-meta-info/meta_info/nomad_meta_info"
)
++
DefaultPythonInterpreter
.
commonDirMapping
()
)
src/test/scala/eu/nomad_lab/parsers/BigDFTParserSpec.scala
deleted
100644 → 0
View file @
f89b3269
/*
* Copyright 2016-2018 Lauri Himanen, Fawzi Mohamed
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package
eu.nomad_lab.parsers
import
org.specs2.mutable.Specification
object
BigDFTParserSpec
extends
Specification
{
"BigDFTParserTest"
>>
{
"test with json-events"
>>
{
ParserRun
.
parse
(
BigDFTParser
,
"parsers/big-dft/test/examples/single_point/output.out"
,
"json-events"
)
must_==
ParseResult
.
ParseSuccess
}
}
"test single_point with json"
>>
{
ParserRun
.
parse
(
BigDFTParser
,
"parsers/big-dft/test/examples/single_point/output.out"
,
"json"
)
must_==
ParseResult
.
ParseSuccess
}
}
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