"root":{
"normalizer":string"ResultsNormalizer"
"event":string"Multiple sets of active orbitals found. Currently, the topology only supports 1, so only the first set is used."
"proc":string"Entry"
"process":string"process_entry"
"process_worker_id":string"xe4Whbt0TkmN1fHGnn9D4g"
"parser":string"parsers/gromacs"
"step":string"ResultsNormalizer"
"logger":string"nomad.processing"
"timestamp":string"2024-02-09 08:37.53"
"level":string"WARNING"
}
"root":{
"errors":string"normalizer failed with exception"
"event":string"process failed"
"proc":string"Entry"
"process":string"process_entry"
"process_worker_id":string"xe4Whbt0TkmN1fHGnn9D4g"
"parser":string"parsers/gromacs"
"error":string"'NoneType' object has no attribute 'normalize'"
"normalizer":string"ResultsNormalizer"
"step":string"ResultsNormalizer"
"logger":string"nomad.processing"
"exception":string"Traceback (most recent call last): File "/home/jfrudzinski/work/soft/nomad/nomad/processing/data.py", line 1520, in normalizing normalizer(self._parser_results).normalize(logger=logger) File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/results.py", line 112, in normalize self.normalize_run(logger=self.logger) File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/results.py", line 213, in normalize_run results.material = MaterialNormalizer( File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/material.py", line 117, in material topology = TopologyNormalizer( File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 215, in topology topology_calc = self.topology_calculation() File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 313, in topology_calculation active_orbital_states = self._extract_orbital() File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 675, in _extract_orbital active_orbitals.normalize(None, None) AttributeError: 'NoneType' object has no attribute 'normalize'"
"timestamp":string"2024-02-09 08:37.53"
"level":string"ERROR"
}
Traceback (most recent call last):
File "/home/jfrudzinski/work/soft/nomad/nomad/processing/data.py", line 1520, in normalizing
normalizer(self._parser_results).normalize(logger=logger)
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/results.py", line 112, in normalize
self.normalize_run(logger=self.logger)
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/results.py", line 213, in normalize_run
results.material = MaterialNormalizer(
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/material.py", line 117, in material
topology = TopologyNormalizer(
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 215, in topology
topology_calc = self.topology_calculation()
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 313, in topology_calculation
active_orbital_states = self._extract_orbital()
File "/home/jfrudzinski/work/soft/nomad/nomad/normalizing/topology.py", line 675, in _extract_orbital
active_orbitals.normalize(None, None)
AttributeError: 'NoneType' object has no attribute 'normalize'