Visualization improvements for MD trajectories
@himanel1 You may want to split these into separate issues, but let me list my ideas here together for discussion:
Suggested improvements:
- Add bonds to the visualization of molecules when the
bond_list
is present (now stored insystem[0].atoms.bond_list
) - Add ability to scroll between a few representative configurations along the trajectory:
- My proposal would be to by default scroll between 5 evenly parsed frames from the trajectory, and then also add the ability to load specific frames (similar to the workflow visualizer)
- We have to be careful here about how these frames are loaded, since it can be a bit slow for bigger systems
- Not really about the visualizer itself, but we may want to reconsider the small changes discussed HERE while we are improving some MD GUI features.