Processing MOF data problems
entry_id: USJgCEf2AjGWqJosqsb3WdEhc3ZF
, upload_id: fTR0JNA9T4aMfpopTSKHhQ
,
parser: parsers/ams
, normalizer: ResultsNormalizer
process installation,
production installation
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/nomad/processing/data.py", line 1228, in normalizing
normalizer(self._parser_results).normalize(logger=logger)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/results.py", line 112, in normalize
self.normalize_run(logger=self.logger)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/results.py", line 205, in normalize_run
properties, conv_atoms, wyckoff_sets, spg_number = self.properties(repr_system, repr_symmetry)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/results.py", line 804, in properties
dos_electronic = self.resolve_dos(['run', 'calculation', 'dos_electronic'])
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/results.py", line 320, in resolve_dos
if valid_array(energies) and valid_array(values):
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/results.py", line 84, in valid_array
return array is not None and len(array) > 0
File "/usr/local/lib/python3.9/site-packages/pint/quantity.py", line 1816, in __len__
return len(self._magnitude)
TypeError: object of type 'numpy.float64' has no len()
-
20 entries in 2 uploads: Unexpected error during normalizing,
entry_id:PEFlVu7-W1-yrdRx5rGlUADNHyTU
, upload_id:fTR0JNA9T4aMfpopTSKHhQ
,
parser:parsers/ams
, normalizer:PorosityNormalizer
process installation, production installation
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 153, in __normalize_system
return self._normalize_system(system, representative)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 80, in _normalize_system
return self.normalize_system(system, is_representative)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/porosity.py", line 101, in normalize_system
if len(indices_in_parent) > 0:
TypeError: object of type 'numpy.int64' has no len()
-
20 entries in 2 uploads: process failed,
entry_id:PEFlVu7-W1-yrdRx5rGlUADNHyTU
, upload_id:fTR0JNA9T4aMfpopTSKHhQ
,
parser:parsers/ams
, normalizer:PorosityNormalizer
process installation, production installation
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/nomad/processing/data.py", line 1228, in normalizing
normalizer(self._parser_results).normalize(logger=logger)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 179, in normalize
self.__normalize_system(repr_sys, True, logger)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 165, in __normalize_system
raise e
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 153, in __normalize_system
return self._normalize_system(system, representative)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/normalizer.py", line 80, in _normalize_system
return self.normalize_system(system, is_representative)
File "/usr/local/lib/python3.9/site-packages/nomad/normalizing/porosity.py", line 101, in normalize_system
if len(indices_in_parent) > 0:
TypeError: object of type 'numpy.int64' has no len()
-
1 entries in 1 uploads: process failed,
entry_id:GWiO4zAGtvYGorzNJW9XdpPTArpE
, upload_id:fTR0JNA9T4aMfpopTSKHhQ
,
parser:parsers/ams
, normalizer: ``
process installation, production installation
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/nomad/processing/data.py", line 1203, in parsing
parser.parse(self.mainfile_file.os_path, self._parser_results, logger=logger, **kwargs)
File "/usr/local/lib/python3.9/site-packages/nomad/parsing/parser.py", line 398, in parse
self.mainfile_parser.parse(mainfile, archive, logger)
File "/usr/local/lib/python3.9/site-packages/electronicparsers/ams/parser.py", line 1381, in parse
self.parse_configurations()
File "/usr/local/lib/python3.9/site-packages/electronicparsers/ams/parser.py", line 1337, in parse_configurations
sec_method = parse_method(geometry_opt)
File "/usr/local/lib/python3.9/site-packages/electronicparsers/ams/parser.py", line 1257, in parse_method
sec_atom_param.orbitals = [str(v) for v in val[0]]
TypeError: 'NoneType' object is not subscriptable