Bump ruff and fix violations

nomad/app/v1/routers/suggestions.py

nomad/app/v1/routers/uploads.py

nomad/cli/client/__init__.py

nomad/datamodel/hdf5.py

nomad/datamodel/metainfo/basesections.py

nomad/datamodel/util.py

nomad/graph/graph_reader.py

nomad/metainfo/data_type.py

nomad/parsing/file_parser/text_parser.py

nomad/parsing/tabular.py

nomad/processing/data.py

nomad/search.py

requirements-dev.txt

tests/fixtures/users.py

tests/metainfo/test_metainfo.py

tests/processing/test_data.py

tests/processing/test_rfc3161.py