Merge branch 'parsers-on-github' into 'v0.10.0'

Parsers on github

See merge request !245

.gitmodules

@@ -16,35 +16,36 @@
 	branch = nomad-fair
 [submodule "dependencies/parsers/cp2k"]
 	path = dependencies/parsers/cp2k
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-cp2k.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-cp2k.git
+	branch = master
 [submodule "dependencies/parsers/crystal"]
 	path = dependencies/parsers/crystal
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-crystal.git
 	branch = nomad-fair
 [submodule "dependencies/parsers/cpmd"]
 	path = dependencies/parsers/cpmd
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-cpmd.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-cpmd.git
+	branch = master
 [submodule "dependencies/parsers/nwchem"]
 	path = dependencies/parsers/nwchem
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-nwchem.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-nwchem.git
+	branch = master
 [submodule "dependencies/parsers/bigdft"]
 	path = dependencies/parsers/bigdft
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-big-dft.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-bigdft.git
+	branch = master
 [submodule "dependencies/parsers/wien2k"]
 	path = dependencies/parsers/wien2k
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-wien2k.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-wien2k.git
+	branch = master
 [submodule "dependencies/parsers/band"]
 	path = dependencies/parsers/band
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-band.git
+	url = https://github.com/nomad-coe/nomad-parser-band.git
+	branch = master
 [submodule "dependencies/parsers/gaussian"]
 	path = dependencies/parsers/gaussian
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gaussian.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-gaussian.git
+	branch = master
 [submodule "dependencies/parsers/quantum-espresso"]
 	path = dependencies/parsers/quantum-espresso
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-quantum-espresso.git
@@ -55,131 +56,141 @@
 	branch = nomad-fair
 [submodule "dependencies/parsers/orca"]
 	path = dependencies/parsers/orca
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-orca.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-orca.git
+	branch = master
 [submodule "dependencies/parsers/castep"]
 	path = dependencies/parsers/castep
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-castep.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-castep.git
+	branch = master
 [submodule "dependencies/parsers/dl-poly"]
 	path = dependencies/parsers/dl-poly
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-dl-poly.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-dl-poly.git
+	branch = master
 [submodule "dependencies/parsers/lib-atoms"]
 	path = dependencies/parsers/lib-atoms
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-lib-atoms.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-lib-atoms.git
+	branch = master
 [submodule "dependencies/parsers/octopus"]
 	path = dependencies/parsers/octopus
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-octopus.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-octopus.git
+	branch = master
 [submodule "dependencies/parsers/phonopy"]
 	path = dependencies/parsers/phonopy
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-phonopy.git
 	branch = nomad-fair
 [submodule "dependencies/parsers/gpaw"]
 	path = dependencies/parsers/gpaw
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gpaw.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-gpaw.git
+	branch = master
 [submodule "dependencies/parsers/atk"]
 	path = dependencies/parsers/atk
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-atk.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-atk.git
+	branch = master
 [submodule "dependencies/parsers/gulp"]
 	path = dependencies/parsers/gulp
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gulp.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-gulp.git
+	branch = master
 [submodule "dependencies/parsers/siesta"]
 	path = dependencies/parsers/siesta
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-siesta.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-siesta.git
+	branch = master
 [submodule "dependencies/parsers/elk"]
 	path = dependencies/parsers/elk
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-elk.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-elk.git
+	branch = master
 [submodule "dependencies/parsers/elastic"]
 	path = dependencies/parsers/elastic
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-elastic.git
 	branch = nomad-fair
 [submodule "dependencies/parsers/gamess"]
 	path = dependencies/parsers/gamess
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gamess.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-gamess.git
+	branch = master
 [submodule "dependencies/parsers/turbomole"]
 	path = dependencies/parsers/turbomole
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-turbomole.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-turbomole.git
+	branch = master
 [submodule "dependencies/parsers/skeleton"]
 	path = dependencies/parsers/skeleton
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-skeleton.git
 	branch = nomad-fair
 [submodule "dependencies/parsers/mpes"]
 	path = dependencies/parsers/mpes
-	url = https://gitlab.mpcdf.mpg.de/rpx/parser-mpes.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-mpes.git
+	branch = master
 [submodule "dependencies/parsers/aptfim"]
 	path = dependencies/parsers/aptfim
-	url = https://gitlab.mpcdf.mpg.de/mkuehbac/parser-aptfim.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-aptfim.git
+	branch = master
 [submodule "dependencies/parsers/dmol3"]
 	path = dependencies/parsers/dmol3
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-dmol3.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-dmol3.git
+	branch = master
 [submodule "dependencies/parsers/fleur"]
 	path = dependencies/parsers/fleur
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-fleur.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-fleur.git
+	branch = master
 [submodule "dependencies/parsers/molcas"]
 	path = dependencies/parsers/molcas
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-molcas.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-molcas.git
+	branch = master
 [submodule "dependencies/parsers/qbox"]
 	path = dependencies/parsers/qbox
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-qbox.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-qbox.git
+	branch = master
 [submodule "dependencies/parsers/onetep"]
 	path = dependencies/parsers/onetep
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-onetep.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-onetep.git
+	branch = master
 [submodule "dependencies/optimade-python-tools"]
 	path = dependencies/optimade-python-tools
 	url = https://github.com/markus1978/optimade-python-tools.git
 [submodule "dependencies/parsers/namd"]
     path = dependencies/parsers/namd
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-namd.git
+	url = https://github.com/nomad-coe/nomad-parser-namd.git
+	branch = master
 [submodule "dependencies/parsers/charmm"]
     path = dependencies/parsers/charmm
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-charmm.git
+	url = https://github.com/nomad-coe/nomad-parser-charmm.git
+	branch = master
 [submodule "dependencies/parsers/dftbplus"]
     path = dependencies/parsers/dftbplus
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-dftb-plus.git
+	url = https://github.com/nomad-coe/nomad-parser-dftbplus.git
+	branch = master
 [submodule "dependencies/parsers/asap"]
     path = dependencies/parsers/asap
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-asap.git
+	url = https://github.com/nomad-coe/nomad-parser-asap.git
+	branch = master
 [submodule "dependencies/parsers/fplo"]
     path = dependencies/parsers/fplo
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-fplo.git
+	url = https://github.com/nomad-coe/nomad-parser-fplo.git
+	branch = master
 [submodule "dependencies/parsers/mopac"]
     path = dependencies/parsers/mopac
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-mopac.git
+	url = https://github.com/nomad-coe/nomad-parser-mopac.git
+	branch = master
 [submodule "dependencies/parsers/amber"]
     path = dependencies/parsers/amber
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-amber.git
+	url = https://github.com/nomad-coe/nomad-parser-amber.git
+	branch = master
 [submodule "dependencies/parsers/gromacs"]
     path = dependencies/parsers/gromacs
     url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gromacs.git
 [submodule "dependencies/parsers/gromos"]
     path = dependencies/parsers/gromos
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gromos.git
+	url = https://github.com/nomad-coe/nomad-parser-gromos.git
+	branch = master
 [submodule "dependencies/parsers/lammps"]
     path = dependencies/parsers/lammps
     url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-lammps.git
 [submodule "dependencies/parsers/openkim"]
     path = dependencies/parsers/openkim
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-openkim.git
+	url = https://github.com/nomad-coe/nomad-parser-openkim.git
+	branch = master
 [submodule "dependencies/parsers/tinker"]
     path = dependencies/parsers/tinker
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-tinker.git
+	url = https://github.com/nomad-coe/nomad-parser-tinker.git
+	branch = master
 [submodule "dependencies/encyclopedia-gui"]
 	path = dependencies/encyclopedia-gui
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/encyclopedia-gui.git
@@ -188,7 +199,8 @@
 	url = https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-dos-fingerprints.git
 [submodule "dependencies/parsers/eelsdb"]
 	path = dependencies/parsers/eelsdb
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/eelsdb.git
+	url = https://github.com/nomad-coe/nomad-parser-eelsdb.git
+	branch = master
 [submodule "dependencies/parsers/example"]
 	path = dependencies/parsers/example
 	url = https://github.com/nomad-coe/nomad-parser-example.git

README.parsers.md

@@ -83,8 +83,8 @@ pip install nomad-lab
 Clone the parser project and install it in development mode:
 
 ```
-git clone $parserGitUrl$ parser-$codeName$
-pip install -e parser-$codeName$
+git clone $parserGitUrl$ nomad-parser-$codeName$
+pip install -e nomad-parser-$codeName$
 ```
 
 Running the parser now, will use the parser's Python code from the clone project.

abinit @ e2c97b91

-Subproject commit 74651abd3196ffdd919efc5069053adb3fb16d71
+Subproject commit e2c97b91a97ff997b41a99df9595ba6faea15f36

amber @ a9dfe7c1

-Subproject commit f2cf15804d33a9f536407321ab768a8367426820
+Subproject commit a9dfe7c1836916e1f6cee161f0b735486c9ee35d

aptfim @ 0bb9e846

-Subproject commit b621df7c0d64d52fba09b610f5bcc8181433b16c
+Subproject commit 0bb9e8468d947dcdeb19ca519d0b99d62121865a

asap @ 41654e54

-Subproject commit 8c5326de349ba3d1dfe33327e6b045fdc70b689d
+Subproject commit 41654e543ee787f94864bcc0dd81f9f49bb2cde7

atk @ 25b11eb5

-Subproject commit 199a7322b7a00c3b658b0b328219b58ecc227c84
+Subproject commit 25b11eb543374b970cf0b3bf3f567b94da1fee31

band @ 1e4ec48d

-Subproject commit a3bb039a1a2ee9672474f4be508b7a63a8320d4b
+Subproject commit 1e4ec48d656dbe9fadccc31afd2b858a5c1cc5cd

bigdft @ 2d899417

-Subproject commit 5eb087b3ab79f2353a8412a8eecf188b31427298
+Subproject commit 2d8994176e9c458879628d13bb5d3acec73f21e2

castep @ d1c8f964

-Subproject commit 10fce35ed127f3732437d595fb5cb9b28dcafecd
+Subproject commit d1c8f9640a80b79656067f468db7955a18783883

charmm @ 23b8f3d9

-Subproject commit 1dcadec2e970ba64888b1f6892560d4c62cb6e14
+Subproject commit 23b8f3d9081b62cf80a69b646b0444471d3b7740

cp2k @ b11c18bb

-Subproject commit e85232d762379860852c6c5d7b6b127e38ec5b7b
+Subproject commit b11c18bb9e0781b80b7c5c49fbaf5ec6d97831ed

cpmd @ 0cd698cb

-Subproject commit 3a982a6906d74bc36ba4d969786ae8e14ccf4ab4
+Subproject commit 0cd698cb24063465028953ce8174124b78b04936

crystal @ df1175fa

-Subproject commit 447cb20b5c8fb095bac5861721b8de96502b5058
+Subproject commit df1175fab88a5216da20b75f81c7374d8df938df

dftbplus @ 945a1ba5

-Subproject commit 43e2d2c0a2559a67ff02316bb958c09e8f9bfe6f
+Subproject commit 945a1ba551450ee8eaebdb6785c78673b075d93e

dl-poly @ d7bbe3a1

-Subproject commit cd095cff74405d335a0cb9cb6166da1f084188ab
+Subproject commit d7bbe3a1608bd1b72ae2b2af3b78aedd9626b49d

dmol3 @ cbf00002

-Subproject commit b840d9ec22e7333e771a14325dac266d4b04da04
+Subproject commit cbf0000267d5c4dcebd6a06c4c9f1e123867953d

eelsdb @ 58d6cfa1

-Subproject commit c1417be5f6cff002f9b10a8d2ad29a4fdfc82f98
+Subproject commit 58d6cfa16d14093a1c00d23ec097a3f370c9756a

elastic @ 7533d541

-Subproject commit 9d4518fefb1f1146b7fa7ed95547822683020533
+Subproject commit 7533d541798b110f17873f640b726cf9d7c6302e

elk @ ff1d69a5

-Subproject commit 0ae8b95f6b68a5eff2b8e60d9f03d6e5f8789ef5
+Subproject commit ff1d69a531096437d84b2a81599f3fb203024a50