Started on integration. Fixes to postgres use in CI.

.gitlab-ci.yml

@@ -77,6 +77,7 @@ tests:
     RABBITMQ_DEFAULT_USER: rabbitmq
     RABBITMQ_DEFAULT_PASS: rabbitmq
     RABBITMQ_DEFAULT_VHOST: /
+    NOMAD_COE_REPO_DB_HOST: postgres
     NOMAD_RABBITMQ_HOST: rabbitmq
     NOMAD_ELASTIC_HOST: elastic
     NOMAD_MONGO_HOST: mongo

integration/build_coe_container.sh

+#!/bin/sh
+
+cd .dependencies/nomad-lab-base
+sbt docker repoTool
+sbt docker repoWebservice
\ No newline at end of file

integration/test_integration.sh

+# import example calculations
+nomad upload --unstage tests/data/proc/examles_vasp.zip
+
+# create a new index with coe repoTool
+docker run nomad/coe-repotool:latest
+
+# start coe repoServer
+docker run nomad/coe-repowebservice:latest
+
+# try to search for new calculations
+curl localhost:8111/...
\ No newline at end of file

linting.sh

-#!/bin/sh
-
-python -m pycodestyle --ignore=E501,E701 nomad tests
-python -m pylint --load-plugins=pylint_mongoengine nomad tests
-python -m mypy --ignore-missing-imports --follow-imports=silent --no-strict-optional nomad tests
\ No newline at end of file

nomad/config.py

@@ -84,11 +84,11 @@ elastic = ElasticConfig(
     calc_index='calcs'
 )
 repository_db = RepositoryDBConfig(
-    host=os.environ.get('NOMAD_REPOSITORY_DB_HOST', 'localhost'),
-    port=int(os.environ.get('NOMAD_REPOSITORY_DB_PORT', 5432)),
-    dbname=os.environ.get('NOMAD_REPOSITORY_DB_NAME', 'nomad'),
-    user=os.environ.get('NOMAD_REPOSITORY_DB_USER', 'postgres'),
-    password=os.environ.get('NOMAD_REPOSITORY_DB_PASSWORD', 'nomad')
+    host=os.environ.get('NOMAD_COE_REPO_DB_HOST', 'localhost'),
+    port=int(os.environ.get('NOMAD_COE_REPO_DB_PORT', 5432)),
+    dbname=os.environ.get('NOMAD_COE_REPO_DB_NAME', 'nomad'),
+    user=os.environ.get('NOMAD_COE_REPO_DB_USER', 'postgres'),
+    password=os.environ.get('NOMAD_COE_REPO_PASSWORD', 'nomad')
 )
 mongo = MongoConfig(
     host=os.environ.get('NOMAD_MONGO_HOST', 'localhost'),