Use ruff as linter

.gitlab-ci.yml

docs/develop/setup.md

docs/explanation/architecture.md

nomad/app/v1/routers/uploads.py

nomad/atomutils.py

nomad/cli/admin/admin.py

nomad/cli/dev.py

nomad/normalizing/porosity.py

nomad/parsing/file_parser/file_parser.py

nomad/parsing/file_parser/text_parser.py

nomad/parsing/nexus/nexus.py

nomad/parsing/tabular.py

nomad/processing/data.py

nomad/search.py

pyproject.toml

requirements-dev.txt

tests/app/v1/routers/test_uploads.py

tests/archive/test_archive.py

tests/conftest.py

tests/logtransfer/conftest.py