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nomad-lab
cpp_sisso
Commits
30518d13
Commit
30518d13
authored
3 years ago
by
Sebastian Eibl
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more kokkos views, less copies
parent
5ae4377d
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Changes
2
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2 changed files
src/loss_function/LossFunctionPearsonRMSE.cpp
+17
-10
17 additions, 10 deletions
src/loss_function/LossFunctionPearsonRMSE.cpp
src/loss_function/LossFunctionPearsonRMSE.hpp
+1
-0
1 addition, 0 deletions
src/loss_function/LossFunctionPearsonRMSE.hpp
with
18 additions
and
10 deletions
src/loss_function/LossFunctionPearsonRMSE.cpp
+
17
−
10
View file @
30518d13
...
@@ -84,6 +84,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(std::vector<double> prop_train,
...
@@ -84,6 +84,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(std::vector<double> prop_train,
_a
(
"A"
,
_n_samp
,
_n_dim
),
_a
(
"A"
,
_n_samp
,
_n_dim
),
_b
(
"b"
,
prop_train
.
size
()),
_b
(
"b"
,
prop_train
.
size
()),
_c
(
"c"
,
_n_task
),
_c
(
"c"
,
_n_task
),
_training_properties
(
"batched_scores"
,
0
),
_batched_scores
(
"batched_scores"
),
_lwork
(
0
),
_lwork
(
0
),
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
{
{
...
@@ -110,6 +112,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(std::shared_ptr<LossFunction> o
...
@@ -110,6 +112,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(std::shared_ptr<LossFunction> o
_a
(
"A"
,
_n_samp
,
_n_dim
),
_a
(
"A"
,
_n_samp
,
_n_dim
),
_b
(
"b"
,
_prop_train
.
size
()),
_b
(
"b"
,
_prop_train
.
size
()),
_c
(
"c"
,
_n_task
),
_c
(
"c"
,
_n_task
),
_training_properties
(
"batched_scores"
,
0
),
_batched_scores
(
"batched_scores"
),
_lwork
(
0
),
_lwork
(
0
),
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
{
{
...
@@ -136,6 +140,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(const LossFunctionPearsonRMSE&
...
@@ -136,6 +140,8 @@ LossFunctionPearsonRMSE::LossFunctionPearsonRMSE(const LossFunctionPearsonRMSE&
_a
(
"A"
,
_n_samp
,
_n_dim
),
_a
(
"A"
,
_n_samp
,
_n_dim
),
_b
(
"b"
,
_prop_train
.
size
()),
_b
(
"b"
,
_prop_train
.
size
()),
_c
(
"c"
,
_n_task
),
_c
(
"c"
,
_n_task
),
_training_properties
(
"batched_scores"
,
0
),
_batched_scores
(
"batched_scores"
),
_lwork
(
0
),
_lwork
(
0
),
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
_estimated_training_properties
(
"estimated_training_properties"
,
0
)
{
{
...
@@ -205,6 +211,13 @@ void LossFunctionPearsonRMSE::set_nfeat(int n_feat)
...
@@ -205,6 +211,13 @@ void LossFunctionPearsonRMSE::set_nfeat(int n_feat)
}
}
Kokkos
::
resize
(
_estimated_training_properties
,
_prop_train_est
.
size
());
Kokkos
::
resize
(
_estimated_training_properties
,
_prop_train_est
.
size
());
Kokkos
::
resize
(
_training_properties
,
_prop_train
.
size
());
for
(
int
material_idx
=
0
;
material_idx
<
_prop_train
.
size
();
++
material_idx
)
{
_training_properties
(
material_idx
)
=
_prop_train
[
material_idx
];
}
}
}
void
LossFunctionPearsonRMSE
::
reset_projection_prop
(
void
LossFunctionPearsonRMSE
::
reset_projection_prop
(
...
@@ -317,6 +330,7 @@ Kokkos::View<double*> LossFunctionPearsonRMSE::operator()(
...
@@ -317,6 +330,7 @@ Kokkos::View<double*> LossFunctionPearsonRMSE::operator()(
Kokkos
::
deep_copy
(
_a
,
1.0
);
Kokkos
::
deep_copy
(
_a
,
1.0
);
set_a
(
feature_indices
,
task_idx
,
start
);
set_a
(
feature_indices
,
task_idx
,
start
);
set_b
(
task_idx
,
start
);
set_b
(
task_idx
,
start
);
Kokkos
::
fence
();
least_squares
(
task_idx
,
start
);
least_squares
(
task_idx
,
start
);
Kokkos
::
deep_copy
(
_a
,
1.0
);
Kokkos
::
deep_copy
(
_a
,
1.0
);
...
@@ -327,17 +341,9 @@ Kokkos::View<double*> LossFunctionPearsonRMSE::operator()(
...
@@ -327,17 +341,9 @@ Kokkos::View<double*> LossFunctionPearsonRMSE::operator()(
start
+=
_task_sizes_train
[
task_idx
];
start
+=
_task_sizes_train
[
task_idx
];
}
}
Kokkos
::
View
<
double
[
MAX_BATCHES
]
>
scores
(
"score"
);
::
get_mean_squared_difference
(
_batched_scores
,
_training_properties
,
_estimated_training_properties
);
Kokkos
::
View
<
double
*>
training_properties
(
"training_properties"
,
_prop_train
.
size
());
for
(
int
material_idx
=
0
;
material_idx
<
_prop_train
.
size
();
++
material_idx
)
return
_batched_scores
;
{
training_properties
(
material_idx
)
=
_prop_train
[
material_idx
];
}
::
get_mean_squared_difference
(
scores
,
training_properties
,
_estimated_training_properties
);
return
scores
;
}
}
double
LossFunctionPearsonRMSE
::
operator
()(
const
std
::
vector
<
model_node_ptr
>&
feats
)
double
LossFunctionPearsonRMSE
::
operator
()(
const
std
::
vector
<
model_node_ptr
>&
feats
)
...
@@ -406,6 +412,7 @@ void LossFunctionPearsonRMSE::set_a(const std::vector<std::vector<int>>& feature
...
@@ -406,6 +412,7 @@ void LossFunctionPearsonRMSE::set_a(const std::vector<std::vector<int>>& feature
assert
(
_descriptor_matrix
.
extent
(
0
)
>=
_task_sizes_train
[
taskind
]
+
start
);
assert
(
_descriptor_matrix
.
extent
(
0
)
>=
_task_sizes_train
[
taskind
]
+
start
);
assert
(
_descriptor_matrix
.
extent
(
1
)
>
max_idx
);
assert
(
_descriptor_matrix
.
extent
(
1
)
>
max_idx
);
Kokkos
::
deep_copy
(
_a
,
1.0
);
auto
a
=
_a
;
auto
a
=
_a
;
auto
descriptor_matrix
=
_descriptor_matrix
;
auto
descriptor_matrix
=
_descriptor_matrix
;
...
...
This diff is collapsed.
Click to expand it.
src/loss_function/LossFunctionPearsonRMSE.hpp
+
1
−
0
View file @
30518d13
...
@@ -55,6 +55,7 @@ protected:
...
@@ -55,6 +55,7 @@ protected:
Kokkos
::
View
<
double
*>
_scores
;
//!< Vector used to temporarily store _projection_prop_sum
Kokkos
::
View
<
double
*>
_scores
;
//!< Vector used to temporarily store _projection_prop_sum
Kokkos
::
View
<
double
*>
_work
;
//!< Work vector for dgels
Kokkos
::
View
<
double
*>
_work
;
//!< Work vector for dgels
Kokkos
::
View
<
double
*>
_training_properties
;
Kokkos
::
View
<
double
*>
_training_properties
;
Kokkos
::
View
<
double
[
MAX_BATCHES
]
>
_batched_scores
;
Kokkos
::
View
<
double
**
,
Kokkos
::
LayoutLeft
>
_descriptor_matrix
;
Kokkos
::
View
<
double
**
,
Kokkos
::
LayoutLeft
>
_descriptor_matrix
;
Kokkos
::
View
<
double
*
[
MAX_BATCHES
],
Kokkos
::
LayoutLeft
>
_estimated_training_properties
;
Kokkos
::
View
<
double
*
[
MAX_BATCHES
],
Kokkos
::
LayoutLeft
>
_estimated_training_properties
;
...
...
This diff is collapsed.
Click to expand it.
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