3rdparty/gap/doc/modcontents.py

-import sphinx
-
-if sphinx.__version__ < '1.0.1':
-    raise RuntimeError("Sphinx 1.0.1 or newer is required")
-
-import inspect
-import pydoc
-
-def process_docstring(app, what, name, obj, options, lines):
-    if what == 'module':
-        print 'Adding contents listing for module %s' % name
-
-        title = 'Module contents for :mod:`%s`:' % name
-        lines.append(title)
-
-        classes = module_classes(obj)
-        if classes:
-            lines.append("""
-.. rubric:: Classes
-
-.. autosummary::
-    
-%s
-
-""" % '\n'.join(['    %s' % cls for cls in classes]))
-
-        funcs = module_functions(obj)
-        if funcs:
-            lines.append("""
-.. rubric:: Functions
-
-.. autosummary::
-
-%s
-            
-""" % '\n'.join(['    %s' % func for func in funcs]))
-
-        # FIXME add documentation for module attributes
-        attributes = module_attributes(obj)
-        if attributes:
-            lines.append("""
-.. rubric:: Attributes
-
-%s
-
-""" % attributes_table(obj, attributes))
-
-
-
-def attributes_table(mod, attributes):
-    MAX_LEN=100
-
-    lines = ['']
-
-    values = [ str(getattr(mod, attr)) for attr in attributes ]
-    for i, value in enumerate(values):
-        if len(value) > MAX_LEN:
-            values[i] = '---'
-
-    attributes = [':attr:`%s`' % attr for attr in attributes ]
-
-    col1 = max(len(attr) for attr in attributes)
-    col2 = max(len(value) for value in values)
-    
-    fmt = '%%-%ds %%-%ds' % (col1, col2)
-    head = fmt % ('='*col1, '='*col2)
-
-    lines.append(head)
-    lines.append(fmt % ('Name', 'Value'))
-    lines.append(head)
-    for attr, value in zip(attributes, values):
-        lines.append(fmt % (attr, value))
-        
-    lines.append(head)
-    lines.append('')
-    return '\n'.join(lines)
-
-
-def module_functions(mod):
-    if hasattr(mod, '__alldoc__'):
-        allsymbols = mod.__alldoc__
-    elif hasattr(mod, '__all__'):
-        allsymbols = mod.__all__
-    else:
-        allsymbols = [name for (name, obj) in inspect.getmembers(mod)]
-    return [name for name in allsymbols if
-            not name.startswith('_') and
-            inspect.isfunction(getattr(mod, name)) and
-            pydoc.getdoc(getattr(mod, name))]
-
-def module_classes(mod):
-    if hasattr(mod, '__alldoc__'):
-        allsymbols = mod.__alldoc__
-    elif hasattr(mod, '__all__'):
-        allsymbols = mod.__all__
-    else:
-        allsymbols = [name for (name, obj) in inspect.getmembers(mod)]
-    return [name for name in allsymbols if
-            not name.startswith('_') and
-            inspect.isclass(getattr(mod, name)) and
-            pydoc.getdoc(getattr(mod, name))]
-
-def module_attributes(mod):
-    if hasattr(mod, '__alldoc__'):
-        allsymbols = mod.__alldoc__
-    elif hasattr(mod, '__all__'):
-        allsymbols = mod.__all__
-    else:
-        allsymbols = [name for (name, obj) in inspect.getmembers(mod)]
-    return [name for name in allsymbols if
-            not name.startswith('_') and
-            not callable(getattr(mod, name)) and
-            pydoc.getdoc(getattr(mod, name))]
-
-
-def setup(app):
-    print('modcontents extension loading')
-    app.connect('autodoc-process-docstring', process_docstring)

3rdparty/gap/doc/tutorials.rst

-Tutorials
-=========
-
-The following tutorials are currently available:
-
-.. toctree::
-   :maxdepth: 1
-
-   gap_fitting_tutorial.ipynb
-   quippy-descriptor-tutorial.ipynb

3rdparty/gap/teach_sparse

-#!/bin/bash
-
-echo
-echo The teach-sparse program is now called gap_fit
-echo

nomad-FAIR @ d9b72a06

+Subproject commit d9b72a06689bc850f46b30e96ad3224f2d761e3a

3rdparty/pysisso/README.md

+Python 3 implimentation of SISSO
\ No newline at end of file