changed paths from .../test/... to /data/...

ff-fit/FF-fit.bkr

@@ -375,7 +375,7 @@
                     "",
                     "",
                     "    data = ForceConfs()",
-                    "    data.read_json_data(filename='/home/beaker/test/data-mlforce/Si_300K.json')",
+                    "    data.read_json_data(filename='/data/shared/tutorials/data-mlforce/Si_300K.json')",
                     "",
                     "    fig = go.Figure(",
                     "        data=[",
@@ -456,7 +456,7 @@
                     "def error_vs_training(temp, train_size, test_size, gp_sigma):",
                     "    ",
                     "    data = ForceConfs()",
-                    "    data.read_json_data(filename='/home/beaker/test/data-mlforce/Si_{}K.json'.format(temp))",
+                    "    data.read_json_data(filename='/data/shared/tutorials/data-mlforce/Si_{}K.json'.format(temp))",
                     "",
                     "    nsample = 4",
                     "    pred_error = []",
@@ -664,7 +664,7 @@
                     "def estimate_potential(train_size,temperature, gp_kernel, gp_sigma):",
                     "    ",
                     "    data = ForceConfs()",
-                    "    data.read_json_data(filename='/home/beaker/test/data-mlforce/Si_{}K.json'.format(temperature))",
+                    "    data.read_json_data(filename='/data/shared/tutorials/data-mlforce/Si_{}K.json'.format(temperature))",
                     "",
                     "    train_confs, train_force, test_confs, test_force = data.subsampling(train_size, 0, random=True)",
                     "",

periodic-table/periodic-table.bkr

@@ -769,8 +769,8 @@
                     "            },",
                     "        },",
                     "        paths = {",
-                    "            \"collections\": \"~/test/periodic-table/data\",",
-                    "            \"periodic_table\": \"~/test/periodic-table\"",
+                    "            \"collections\": \"/data/shared/tutorials/periodic-table/data\",",
+                    "            \"periodic_table\": \"/data/shared/tutorials/periodic-table\"",
                     "        };",
                     "",
                     "    /**",

soap-similiarity/SOAP_similarity.bkr

@@ -728,7 +728,7 @@
                     "    legend_title = 'Energy'",
                     "elif options['run']['config_folder'] == 'gdb':",
                     "    data_folder = None",
-                    "    json_list = ['/home/beaker/test/nomad_sim/gdb13_7k/dsgdb7njp_ase_attributes.xyz']",
+                    "    json_list = ['/data/shared/tutorials/nomad_sim/gdb13_7k/dsgdb7njp_ase_attributes.xyz']",
                     "    data_file_format = 'xyz'",
                     "    frame_list = [ i for i in range(options['run']['n_blocksize']) ]",
                     "    frame_list_idcs = [ (0,i) for i in frame_list ]",

topological-quantum-phases/QSHI_trivial.bkr

@@ -154,7 +154,7 @@
                 ". <br>",
                 "You can download the code <a href=\"https://github.com/rouyang2017/SISSO\">here</a> .",
                 "</div>",
-                " Click  first <b>Reference settings</b> and afterwards <b>RUN</b>  to reproduce the results of the following paper:",
+                " Click  <b>RUN</b>  to reproduce the results of the following paper:",
                 "<div style=\"padding: 1ex; margin-top: 1ex; margin-bottom: 1ex; border-style: dotted; border-width: 1pt; border-color: blue; border-radius: 3px;\">",
                 "C. M. Acosta, R. Ouyang, A. Fazzio, M. Scheffler, L. M. Ghiringhelli, C. Carbogno <span style=\"font-style: italic;\">Analysis of Topological Transitions in Two-dimensional Materials by Compressed Sensing, </span> <a href=\"https://arxiv.org/abs/1710.03319\">https://arxiv.org/abs/1805.10950</a> (2018).",
                 "</div>",