Merge branch 'pymat_module_error_fix' into 'master'

Pymat module error fix

See merge request nomad-lab/analytics-query-nomad-archive!4

query_nomad_archive/atomic_properties_pymat.py

@@ -8,6 +8,7 @@ from metainfo.metainfo import atomic_properties_pymat,metadata
 import pandas as pd
 import numpy as np
 import urllib, json, re, typing
+from pandas.io.json import json_normalize
 
 
 # 
@@ -40,7 +41,7 @@ df1 = pd.read_json('./data/json/periodic_table.json')
 
 for elem in df1.columns:
     if type(df1.loc['Shannon radii'][elem]) == dict:
-        df1.loc['Shannon radii'][elem] = (pd.json_normalize(df1.loc['Shannon radii'][elem]).to_dict(orient='records')[0])
+        df1.loc['Shannon radii'][elem] = (json_normalize(df1.loc['Shannon radii'][elem]).to_dict(orient='records')[0])
 
 
 # ### replace the missing spin data for Shannon radii keys into a dictionary

query_nomad_archive/periodictable.py

@@ -23,7 +23,7 @@ import pandas as pd
 # Use periods as y axis and groups as x axis for our plot
 periods = ["I", "II", "III", "IV", "V", "VI", "VII"," ","LC","AC"]
 groups = [str(x) for x in range(1, 19)]
-
+pd.options.mode.chained_assignment = None
 
 # In[3]:
 
@@ -821,7 +821,7 @@ def ptableplotgenf(Feature):
     if Feature == 'atomic_r_d_neg_1' :
         color_mapper = linear_cmap(field_name = 'atomic_r_d_neg_1', palette = Colorblind[8], 
                                    low = dffa['atomic_r_d_neg_1'].min(), 
-                                   high = dffa['atomic_r_dn_val_1'].max())
+                                   high = dffa['atomic_r_d_neg_1'].max())
         p2.hover.tooltips = [
         ("Name", "@name"),
         ("Type", "@metal"),