close #38

README.md

-# ATUMtomeUI
-User interface to drive automated tape collecting ultramicrotome
+# BrainATUMtome
+control software for an ultramicrotome with an automatic slice collector
 
-## Tape
-[motor](https://www.maxonmotor.de/maxon/view/service_search?query=372161)
+## hardware components
 
-[driver](https://www.maxonmotor.de/maxon/view/product/control/Positionierung/390438)
+### ATUMtome
+automated tape collecting [ultramicrotome](https://www.scienceservices.eu/atumtome-automated-tape-collecting-ultramicrotome.html)
 
-[tension motor](http://shop.sdp-si.com/catalog/product/?id=A%203Z16-0020C)
+### ultramicrotome
+ultramicrotome [Leica EM UC7](https://www.leica-microsystems.com/products/sample-preparation-for-electron-microscopy/p/leica-em-uc7/)
 
+RS232 [interface](https://gitlab.mpcdf.mpg.de/mpibr/scic/BrainATUMtome/-/blob/master/config/EMUC7_RS232Interface_OM_EN_09_16.pdf)
 
-## Parameters
+usb camera with [OpenCV](https://docs.opencv.org/4.5.2/d8/dfe/classcv_1_1VideoCapture.html) driver
 
-### Microtome (UC7)
+### tape motors
+
+tape motors [MAXON 372161](https://www.maxongroup.de/maxon/view/service_search?query=372161)
+
+tension motor [A 3Z16-0020C](http://shop.sdp-si.com/catalog/product/?id=A%203Z16-0020C)
+
+microcontroller [EPOS2 24/2](https://www.maxongroup.de/maxon/view/product/control/Positionierung/390438)
+
+[EPOS2](https://www.ni.com/de-de/support/downloads/tools-network/download.epos2-positioning-controller-driver.html#374326) positioning controller driver
+
+
+* maxon motors
+	* BOTTOM = USB0
+	* TOP = USB1
+
+* digital outputs
+	* GREEN LIGHT<br>
+	USB0, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13
+	* SOUND<br>USB0, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12
+	* SUPPORT MOTORS<br>USB1, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13
+	* RED LIGHT<br>USB1, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12
+
+
+
+### syringe
+
+
+
+## parameters
+
+### microtome (UC7)
   * Cutting speed [mm/s]	0.1 – 2
   * Cutting thickness (feed) [µm]	0.025 – 300
   * Start/Stop cutting	Motor off/on
@@ -22,7 +54,7 @@ User interface to drive automated tape collecting ultramicrotome
   * N/S motor movement [µm]	Relative movement (0.1 – 500)
   * E/W motor movement [µm]	Relative movement (0.1 – 500)
 
-### Camera
+### camera
   * Live-image
   * gain
   * exposure time
@@ -30,52 +62,16 @@ User interface to drive automated tape collecting ultramicrotome
   * Snapshot
   * Video recording
   
-### Water pump
+### water pump
   * 1 button to activate pump
   * Dispersed volume/activation: ?? (I will figure it out and send you the values)
 
-### Tape mechanism
+### tape mechanism
   * Tape speed: 0.1 – 2 mm/s (calibration required!!)
   * Start/stop tape motors
   * Tape tension: support motors on/off
 
 
-## Implementation
-
-### Classes
-* MainWindow (controller)
-* DriverVideoStream
-* DriverMicrotome
-* DriverWaterPump
-* DriverTapeMechanism
-
-### Virtual class driver
-* DriverAbstract
-	* isRunning()
-	* Start()
-	* Stop()
-	* Trigger() 
-
-## Drawing a rectangle for ROI
-### Classes
-* QGraphicsObject
-* QPen
-* QPainter
-* QGraphicsScene
-* QGraphicsSceneMouseEvent
-* QRectF
-
-
-## Reference readings
-Maxon motor [EPOS2](http://www.optolab.ti.bfh.ch/wiki/_media/huce:roboticslab:tutorials:maxonmotor:epos_studio_exercises.pdf) tutorial
-
-### Maxon Motors
-* BOTTOM = USB0
-* TOP = USB1
-
-### Digital Outputs
-* GREEN LIGHT = USB0, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13
-* SOUND = USB0, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12
-* SUPPORT MOTORS = USB1, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13
-* RED LIGHT = USB1, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12
+
+