Commit 9c3c78bd authored by lucas_miranda's avatar lucas_miranda
Browse files

Updated deepof experiments

parent 06f05e99
Pipeline #97788 passed with stages
in 17 minutes and 35 seconds
......@@ -14,8 +14,8 @@ Plot rule graph: snakemake --snakefile deepof_experiments.smk --forceall --ruleg
import os
outpath = "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/"
losses = ["ELBO"] # , "MMD", "ELBO+MMD"]
encodings = [6] # [2, 4, 6, 8, 10, 12, 14, 16]
losses = ["ELBO" , "MMD", "ELBO+MMD"]
encodings = [2, 4, 6, 8, 10, 12, 14, 16]
cluster_numbers = [25] # [1, 5, 10, 15, 20, 25]
latent_reg = ["none", "categorical", "variance", "categorical+variance"]
entropy_knn = [20, 50, 80, 100]
......@@ -24,7 +24,7 @@ pheno_weights = [0.01, 0.1, 0.25, 0.5, 1.0, 2.0, 4.0, 10.0, 100.0]
rule deepof_experiments:
input:
"/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/supplementary_notebooks/recognise_elliptical_arena.ipynb",
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/supplementary_notebooks/recognise_elliptical_arena.ipynb",
# expand(
# os.path.join(
# outpath,
......@@ -34,15 +34,15 @@ rule deepof_experiments:
# k=cluster_numbers,
# enc=encodings,
# ),
# expand(
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/latent_regularization_experiments/trained_weights/"
# "GMVAE_loss={loss}_encoding={encs}_k={k}_latreg={latreg}_entropyknn={entknn}_final_weights.h5",
# loss=losses,
# encs=encodings,
# k=cluster_numbers,
# latreg=latent_reg,
# entknn=entropy_knn,
# ),
expand(
"/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/latent_regularization_experiments/trained_weights/"
"GMVAE_loss={loss}_encoding={encs}_k={k}_latreg={latreg}_entropyknn={entknn}_final_weights.h5",
loss=losses,
encs=encodings,
k=cluster_numbers,
latreg=latent_reg,
entknn=entropy_knn,
),
# expand(
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/pheno_classification_experiments/trained_weights/"
# "GMVAE_loss={loss}_encoding={encs}_k={k}_pheno={phenos}_run_1_final_weights.h5",
......
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