Commit 1e83611f authored by lucas_miranda's avatar lucas_miranda
Browse files

Refactored functions in

parent 0587b97a
......@@ -5,19 +5,20 @@ import numpy as np
import pandas as pd
import seaborn as sns
from itertools import cycle
from typing import List, Dict
def plot_speed(Behaviour_dict, Treatments):
def plot_speed(behaviour_dict: dict, treatments: Dict[List]) -> plt.figure:
"""Plots a histogram with the speed of the specified mouse.
Treatments is expected to be a list of lists with mice keys per treatment"""
fig, [ax1, ax2] = plt.subplots(1, 2, figsize=(20, 10))
for Treatment, Mice_list in Treatments.items():
hist = pd.concat([Behaviour_dict[mouse] for mouse in Mice_list])
for Treatment, Mice_list in treatments.items():
hist = pd.concat([behaviour_dict[mouse] for mouse in Mice_list])
sns.kdeplot(hist["bspeed"], shade=True, label=Treatment, ax=ax1)
sns.kdeplot(hist["wspeed"], shade=True, label=Treatment, ax=ax2)
......@@ -30,10 +31,13 @@ def plot_speed(Behaviour_dict, Treatments):
def plot_heatmap(dframe, bodyparts, xlim, ylim, save=False):
def plot_heatmap(
dframe: pd.DataFrame, bodyparts: List, xlim: float, ylim: float, save: str = False
) -> plt.figure:
"""Returns a heatmap of the movement of a specific bodypart in the arena.
If more than one bodypart is passed, it returns one subplot for each"""
# noinspection PyTypeChecker
fig, ax = plt.subplots(1, len(bodyparts), sharex=True, sharey=True)
for i, bpart in enumerate(bodyparts):
......@@ -48,26 +52,24 @@ def plot_heatmap(dframe, bodyparts, xlim, ylim, save=False):
[x.set_ylim(ylim) for x in ax]
[x.set_title(bp) for x, bp in zip(ax, bodyparts)]
if save != False:
if save:
def model_comparison_plot(
cv_types=["spherical", "tied", "diag", "full"],
bic: list,
m_bic: list,
n_components_range: range,
cov_plot: str,
save: str,
cv_types: tuple = ("spherical", "tied", "diag", "full"),
) -> plt.figure:
"""Plots model comparison statistics over all tests"""
m_bic = np.array(m_bic)
color_iter = cycle(["navy", "turquoise", "cornflowerblue", "darkorange"])
clf = best_bic_gmm
bars = []
# Plot the BIC scores
......@@ -93,6 +95,7 @@ def model_comparison_plot(
+ 0.5
+ 0.2 * np.floor(m_bic.argmin() / len(n_components_range))
# noinspection PyArgumentList
spl.text(xpos, m_bic.min() * 0.97 + 0.1 * m_bic.max(), "*", fontsize=14)
spl.legend([b[0] for b in bars], cv_types)
spl.set_ylabel("BIC value")
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