Commit 04753bdc authored by lucas_miranda's avatar lucas_miranda
Browse files

Updated .ipynb files to follow Black style guidelines

parent e2f31b91
Pipeline #97107 canceled with stages
in 28 minutes and 23 seconds
......@@ -24,6 +24,7 @@ pheno_weights = [0.01, 0.1, 0.25, 0.5, 1.0, 2.0, 4.0, 10.0, 100.0]
rule deepof_experiments:
input:
"/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/supplementary_notebooks/regognise_elliptical_arena.ipynb",
# expand(
# os.path.join(
# outpath,
......@@ -33,15 +34,15 @@ rule deepof_experiments:
# k=cluster_numbers,
# enc=encodings,
# ),
expand(
"/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/latent_regularization_experiments/trained_weights/"
"GMVAE_loss={loss}_encoding={encs}_k={k}_latreg={latreg}_entropyknn={entknn}_final_weights.h5",
loss=losses,
encs=encodings,
k=cluster_numbers,
latreg=latent_reg,
entknn=entropy_knn,
),
# expand(
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/latent_regularization_experiments/trained_weights/"
# "GMVAE_loss={loss}_encoding={encs}_k={k}_latreg={latreg}_entropyknn={entknn}_final_weights.h5",
# loss=losses,
# encs=encodings,
# k=cluster_numbers,
# latreg=latent_reg,
# entknn=entropy_knn,
# ),
# expand(
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/pheno_classification_experiments/trained_weights/"
# "GMVAE_loss={loss}_encoding={encs}_k={k}_pheno={phenos}_run_1_final_weights.h5",
......@@ -52,6 +53,21 @@ rule deepof_experiments:
# ),
rule elliptical_arena_detector:
input:
vid_path="./supplementary_notebooks/",
log_path="./logs/",
out_path="./trained_models/",
output:
exec="supplementary_notebooks/regognise_elliptical_arena.ipynb",
shell:
"papermill supplementary_notebooks/regognise_elliptical_arena.ipynb "
"-p vid_path {input.vid_path} "
"-p log_path {input.log_path} "
"-p out_path {input.out_path} "
"{output.exec}"
rule coarse_hyperparameter_tuning:
input:
data_path="/psycl/g/mpsstatgen/lucas/DLC/DLC_models/deepof_single_topview/",
......
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