Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
N
NIFTy
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
13
Issues
13
List
Boards
Labels
Service Desk
Milestones
Merge Requests
11
Merge Requests
11
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Packages & Registries
Packages & Registries
Container Registry
Analytics
Analytics
CI / CD
Repository
Value Stream
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
ift
NIFTy
Commits
8189bc41
Commit
8189bc41
authored
Jan 07, 2019
by
Martin Reinecke
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
cleanups
parent
fdac5666
Changes
3
Hide whitespace changes
Inline
Side-by-side
Showing
3 changed files
with
15 additions
and
33 deletions
+15
-33
Dockerfile
Dockerfile
+1
-1
README.md
README.md
+9
-18
docs/source/installation.rst
docs/source/installation.rst
+5
-14
No files found.
Dockerfile
View file @
8189bc41
...
...
@@ -9,7 +9,7 @@ RUN apt-get update && apt-get install -y \
# Documentation build dependencies
python-sphinx python-sphinx-rtd-theme python-numpydoc \
# Testing dependencies
python3-
nose python3-
coverage python3-parameterized python3-pytest python3-pytest-cov \
python3-coverage python3-parameterized python3-pytest python3-pytest-cov \
# Optional NIFTy dependencies
openmpi-bin libopenmpi-dev python3-mpi4py \
# Packages needed for NIFTy
...
...
README.md
View file @
8189bc41
...
...
@@ -37,7 +37,7 @@ Installation
### Requirements
-
[
Python
](
https://www.python.org/
)
(
v2.7.x
or 3.5.x
)
-
[
Python
3
](
https://www.python.org/
)
(
3.5.x
or later
)
-
[
SciPy
](
https://www.scipy.org/
)
-
[
pyFFTW
](
https://pypi.python.org/pypi/pyFFTW
)
...
...
@@ -61,8 +61,8 @@ distributions, the "apt" lines will need slight changes.
NIFTy5 and its mandatory dependencies can be installed via:
sudo apt-get install git libfftw3-dev python
python-pip python
-dev
pip install --user git+https://gitlab.mpcdf.mpg.de/ift/NIFTy.git@NIFTy_5
sudo apt-get install git libfftw3-dev python
3 python3-pip python3
-dev
pip
3
install --user git+https://gitlab.mpcdf.mpg.de/ift/NIFTy.git@NIFTy_5
(Note: If you encounter problems related to
`pyFFTW`
, make sure that you are
using a pip-installed
`pyFFTW`
package. Unfortunately, some distributions are
...
...
@@ -71,35 +71,26 @@ with the installed `FFTW3` libraries.)
Plotting support is added via:
pip install --user matplotlib
pip
3
install --user matplotlib
Support for spherical harmonic transforms is added via:
pip install --user git+https://gitlab.mpcdf.mpg.de/ift/pyHealpix.git
pip
3
install --user git+https://gitlab.mpcdf.mpg.de/ift/pyHealpix.git
MPI support is added via:
sudo apt-get install openmpi-bin libopenmpi-dev
pip install --user mpi4py
### Installation for Python 3
If you want to run NIFTy with Python 3, you need to make the following changes
to the instructions above:
-
in all
`apt-get`
commands, replace
`python-*`
by
`python3-*`
-
in all
`pip`
commands, replace
`pip`
by
`pip3`
pip3 install --user mpi4py
### Running the tests
In oder to run the tests one needs two additional packages:
pip install --user nose parameterized coverage
sudo apt-get install python3-coverage python3-parameterized python3-pytest python3-pytest-cov
Afterwards the tests (including a coverage report) can be run using the
following command in the repository root:
nosetests -x --with-coverage --cover-html --cover-package=nifty5
pytest-3 --cov=nifty5 test
### First Steps
...
...
@@ -108,7 +99,7 @@ For a quick start, you can browse through the [informal
introduction
](
http://ift.pages.mpcdf.de/NIFTy/code.html
)
or
dive into NIFTy by running one of the demonstrations, e.g.:
python demos/getting_started_1.py
python
3
demos/getting_started_1.py
### Acknowledgement
...
...
docs/source/installation.rst
View file @
8189bc41
...
...
@@ -7,8 +7,8 @@ distributions, the "apt" lines will need slight changes.
NIFTy5 and its mandatory dependencies can be installed via::
sudo apt-get install git libfftw3-dev python
python-pip python
-dev
pip
install --user git+https://gitlab.mpcdf.mpg.de/ift/NIFTy.git@NIFTy_4
sudo apt-get install git libfftw3-dev python
3 python3-pip python3
-dev
pip
3 install --user git+https://gitlab.mpcdf.mpg.de/ift/NIFTy.git@NIFTy_5
(Note: If you encounter problems related to `pyFFTW`, make sure that you are
using a pip-installed `pyFFTW` package. Unfortunately, some distributions are
...
...
@@ -17,22 +17,13 @@ with the installed `FFTW3` libraries.)
Plotting support is added via::
pip install --user matplotlib
pip
3
install --user matplotlib
Support for spherical harmonic transforms is added via::
pip install --user git+https://gitlab.mpcdf.mpg.de/ift/pyHealpix.git
pip
3
install --user git+https://gitlab.mpcdf.mpg.de/ift/pyHealpix.git
MPI support is added via::
sudo apt-get install openmpi-bin libopenmpi-dev
pip install --user mpi4py
Installation for Python 3
-------------------------
If you want to run NIFTy with Python 3, you need to make the following changes
to the instructions above:
- in all `apt-get` commands, replace `python-*` by `python3-*`
- in all `pip` commands, replace `pip` by `pip3`
pip3 install --user mpi4py
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment