* updated conda environment.yml and setup instructions to use it
* add History.md
* update notebook
* add example provenance notebook
* add Provenance.clear() method
* revert .9 -> .1
* forgot adding this file to staging
* removed rotation of astri cameras
* typo
* moved uncertainty from predict to fit_core_crosses
* add automatic provenance in Tool and io
* added uncertainty on position fit
* fixed missing camera rotation
* fix bug in ctapipe-dump-triggers tool
* use Singleton metaclass for provenance
* refactoring
* separate activity provenance from global provenance
* cleanups to proveance class and core init
* update provenence
* mini change in doc string
* first attempt at system provenance and time sampling
* Corrected tests for charge_resolution
* Corrected example cmdline arguments
* some updates to example notebooks
* Corrected r0 to dl0
* merge and apply fixes to PR#284
* Replaced event.dl0 calls to event.r0
* small fix to example
* add --all option to ctapipe-info
* fix broken --dependencies option in ctapipe-info
* fix in camera_rotation
* fix bug in CameraDisplay
* mask in geometry now uses bools instead of int
* minor camera display update
* use cta-observatory conda channel for pyhessio install
* remove version cache from git repo and make sure it's in .gitignore
* improve camdemo tool
* add version cache to gitignore
* remove import of unused npLinAlgError
* replaced least chi2 calculation with numpy build-in
* stuff
* Added pedestal_path and tf_path to CameraR1CalibratorFactor, as real cameras require these separate files for calibration
* Corrected bug in Factory
* When saving the pickle file, the directory will created if it doesn't exist
* Some refactoring
* Update Charge Resolution
* Small change to how integration window is plotted
* Included extra external children
* Corrected container
* Corrected @observe logging
* Corrected container for DL0
* Updated examples/display_integrator.py to use new calibration steps
* Updated calibration pipeline to use new calibration steps
* Renamed examples/dl1_calibration.py back to examples/calibration_pipeline.py as it now contains the whole calibration chain from r0 to dl1
* Corrections to pass tests
* Added tests for calibrators
* Removed calibrate_source
* Corrected check_*_exists
* Renamed test files Renamed MCR1Calibrator to HessioR1Calibrator
* Created function check_*_exists in each calibration step to allow them to be ran even if the data has been read at a later calibration step
* Created dl0.py to handle to data volume reduction in the conversion from r1 to dl0. Created reductors.py to contain the date volume reductors that can be passed as an argument to CameraDL0Reducer in dl0.py.
* Corrected r1.py to loop through all telescopes that have data in the event
* Removed dl0 correction for mc files - this is now handled by r1.py
* Removed mc.py and mycam.py as they do not fit in the new calib methodology
* Created r1 calibrator component - should replace mc.py
* Added origin attribute to EventFileReader class - useful for components that depend on the file type
* Updated docstring
* Renamed ctapipe/calib/camera/calibrators.py to ctapipe/calib/camera/dl1.py
* Removed clearing of dl2
* Imported external classes that should be included in the factory
* Refactored dl0 container to r0 container Created new containers: r1 (containing r1 calibrated data) and dl0 (containing data volume reduced data)
n.n.n / 2017-03-13
==================
* Merge branch 'master' of https://github.com/cta-observatory/ctapipe into add_provenence_system
* Merge pull request #344 from kosack/master
* updated conda environment.yml and setup instructions to use it
* add History.md
* update notebook
* Merge pull request #341 from watsonjj/charge_resolution_component
* Merge pull request #321 from tino-michael/shower_reco
* add example provenance notebook
* add Provenance.clear() method
* revert .9 -> .1
* forgot adding this file to staging
* removed rotation of astri cameras
* typo
* moved uncertainty from predict to fit_core_crosses
* add automatic provenance in Tool and io
* added uncertainty on position fit
* fixed missing camera rotation
* Merge branch 'master' of https://github.com/cta-observatory/ctapipe into add_provenence_system
* Merge pull request #342 from kosack/fix_dump_trigger_tool
* fix bug in ctapipe-dump-triggers tool
* use Singleton metaclass for provenance
* refactoring
* separate activity provenance from global provenance
* cleanups to proveance class and core init
* update provenence
* mini change in doc string
* first attempt at system provenance and time sampling
* Merge pull request #329 from tino-michael/geom_mask
* Merge pull request #339 from watsonjj/small_example_fix
* Corrected tests for charge_resolution
* Merge remote-tracking branch 'remotes/upstream/master' into charge_resolution_component
* Corrected example cmdline arguments
* Merge pull request #338 from kosack/master
* some updates to example notebooks
* Merge branch 'master' of https://github.com/cta-observatory/ctapipe
* Merge pull request #337 from watsonjj/small_example_fix
* Merge pull request #336 from kosack/watsonjj-r0container
* Merge branch 'master' into watsonjj-r0container
* Merge pull request #284 from watsonjj/r0container
* merge and apply fixes to PR#284
* Merge remote-tracking branch 'remotes/upstream/master' into r0container
* Replaced event.dl0 calls to event.r0
* Merge branch 'master' of https://github.com/cta-observatory/ctapipe into watsonjj-r0container
* Merge branch 'r0container' of https://github.com/watsonjj/ctapipe into watsonjj-r0container
* Merge pull request #335 from kosack/master
* small fix to example
* Merge pull request #334 from kosack/master
* add --all option to ctapipe-info
* fix broken --dependencies option in ctapipe-info
* fix in camera_rotation
* Merge pull request #333 from kosack/docupdate
* Merge remote-tracking branch 'cta-observatory/master' into docupdate
* Merge pull request #331 from kosack/master
* fix bug in CameraDisplay
* Merge branch 'master' of https://github.com/cta-observatory/ctapipe into feature/--help
* mask in geometry now uses bools instead of int
* Merge remote-tracking branch 'remotes/upstream/master' into r0container
* minor camera display update
* Merge pull request #326 from kosack/master
* use cta-observatory conda channel for pyhessio install
* Merge pull request #325 from kosack/master
* remove version cache from git repo and make sure it's in .gitignore
* Merge pull request #324 from kosack/master
* improve camdemo tool
* add version cache to gitignore
* Merge branch 'r0container' into charge_resolution_component
* remove import of unused npLinAlgError
* replaced least chi2 calculation with numpy build-in
* Merge branch 'master' into shower_reco
* Merge remote-tracking branch 'remotes/upstream/master' into r0container
* stuff
* Added pedestal_path and tf_path to CameraR1CalibratorFactor, as real cameras require these separate files for calibration
* Corrected bug in Factory
* When saving the pickle file, the directory will created if it doesn't exist
* Some refactoring
* Update Charge Resolution
* Merge remote-tracking branch 'remotes/upstream/master' into r0container
* Merge branch 'filereader' into r0container
* Merge branch 'filereader' into r0container
* Small change to how integration window is plotted
* Included extra external children
* Corrected container
* Corrected @observe logging
* Corrected container for DL0
* Updated examples/display_integrator.py to use new calibration steps
* Updated calibration pipeline to use new calibration steps
* Renamed examples/dl1_calibration.py back to examples/calibration_pipeline.py as it now contains the whole calibration chain from r0 to dl1
* Corrections to pass tests
* Added tests for calibrators
* Removed calibrate_source
* Corrected check_*_exists
* Renamed test files Renamed MCR1Calibrator to HessioR1Calibrator
* Created function check_*_exists in each calibration step to allow them to be ran even if the data has been read at a later calibration step
* Created dl0.py to handle to data volume reduction in the conversion from r1 to dl0. Created reductors.py to contain the date volume reductors that can be passed as an argument to CameraDL0Reducer in dl0.py.
* Corrected r1.py to loop through all telescopes that have data in the event
* Removed dl0 correction for mc files - this is now handled by r1.py
* Removed mc.py and mycam.py as they do not fit in the new calib methodology
* Created r1 calibrator component - should replace mc.py
* Added origin attribute to EventFileReader class - useful for components that depend on the file type
* Updated docstring
* Renamed ctapipe/calib/camera/calibrators.py to ctapipe/calib/camera/dl1.py
* Removed clearing of dl2
* Imported external classes that should be included in the factory
* Refactored dl0 container to r0 container Created new containers: r1 (containing r1 calibrated data) and dl0 (containing data volume reduced data)
