Merge branch 'compile-c' into 'master'

Compile with language C by default

See merge request !18

CHANGELOG.md

-## Version 1.1.3
+## Version 1.2.0
 
-* Add compile flag `--conda-warnings off` only if pyccel version is 1.8.0 or greater.
+* Compile with language C by default.
\ No newline at end of file
+* Added command line options, seen with `compile-gvec-tp -h`
+* The "--compiler" option can now take the four compilers available in pyccel ("GNU" is the default, "intel", "PGI", "nvidia").
+Moreover, a JSON file can be specified to define a custom compiler (see pyccel doc).
\ No newline at end of file

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "gvec-to-python"
-version = "1.1.3"
+version = "1.2.0"
 readme = "README.md"
 requires-python = ">=3.7"
 license = {file = "LICENSE"}
@@ -21,13 +21,14 @@ classifiers = [
     "Programming Language :: Python :: 3",
     ]
 dependencies = [
-    'matplotlib>=3.3.3',
-    'numpy>=1.19.5',
-    'pandas>=1.2.1',
+    'matplotlib',
+    'numpy',
+    'pandas',
     'pyccel',
-    'scipy>=1.6.0',
-    'tqdm>=4.56.0',
-    'vtk>=9.0.3', 
+    'scipy',
+    'tqdm',
+    'vtk', 
+    'argcomplete',
 ]
 
 [project.urls]

src/gvec_to_python/Makefile

@@ -5,6 +5,8 @@
 PYTHON  := python3
 SO_EXT  := $(shell $(PYTHON) -c "import sysconfig; print(sysconfig.get_config_var('EXT_SUFFIX'))")
 LIBDIR  := $(shell $(PYTHON) -c "import sysconfig; print(sysconfig.get_config_var('LIBDIR'))")
+install_path := $(shell $(PYTHON) -c "import gvec_to_python as _; print(_.__path__[0])")
+
 FLAGS            := --libdir $(LIBDIR) $(flags) 
 
 #--------------------------------------
@@ -28,10 +30,10 @@ OUTPUTS := $(SOURCES:.py=$(SO_EXT))
 all: $(OUTPUTS)
 
 $(BK)$(SO_EXT) : $(BK).py
-	pyccel $< $(FLAGS)
+	pyccel $(FLAGS) $< 
 
 $(BEV1)$(SO_EXT) : $(BEV1).py $(BK)$(SO_EXT)
-	pyccel $< $(FLAGS)
+	pyccel $(FLAGS) $< 
 
 
 #--------------------------------------

src/gvec_to_python/console/compile.py

@@ -4,17 +4,79 @@ def compile_gvec_to_python():
     import os
     import gvec_to_python
     import pyccel
+    import argparse
+    import importlib.metadata
+    import argcomplete
+
+    # setup argument parser
+    parser = argparse.ArgumentParser(prog='gvec_to_python',
+                                     description='3D MHD equilibria from GVEC in Python.')
+    
+    # version message
+    __version__ = importlib.metadata.version("gvec_to_python")
+    version_message = f'gvec_to_python {__version__}\n'
+    version_message += 'Copyright 2022 (c) T.K. Cheng, F. Hindenlang, S. Possanner | Max Planck Institute for Plasma Physics\n'
+    version_message += 'MIT license\n'
+
+    # arguments
+    parser.add_argument('-v', '--version', action='version',
+                        version=version_message)
+    
+    parser.add_argument('--language',
+                                type=str,
+                                metavar='LANGUAGE',
+                                help='either "c" (default) or "fortran"',
+                                default='c')
+    
+    parser.add_argument('--compiler',
+                                type=str,
+                                metavar='COMPILER',
+                                help='either "GNU" (default), "intel", "PGI", "nvidia" or the path to a JSON compiler file.',
+                                default='GNU')
+
+    parser.add_argument('-d', '--delete',
+                                help='remove .f90/.c and .so files (for running pure Python code)',
+                                action='store_true')
+
+    parser.add_argument('--verbose',
+                                help='call pyccel with --verbose compiler option',
+                                action='store_true')
+    
+    # parse argument
+    argcomplete.autocomplete(parser)
+    args = parser.parse_args()
+    kwargs = vars(args)
 
     libpath = gvec_to_python.__path__[0]
     
+    if any([s == ' ' for s in libpath]):
+        raise NameError(
+            f'gvec-to.python installation path MUST NOT contain blank spaces. Please rename "{libpath}".')
+
+    if kwargs['delete']:
+
+        # (change dir not to be in source path)
+        print('\nDeleting .f90/.c and .so files ...')
+        subprocess.run(['make',
+                        'clean',
+                        '-f',
+                        os.path.join(libpath, 'Makefile'),
+                        ], check=True, cwd=libpath)
+        print('Done.')
+    
+    else:
         # pyccel flags
-    flags = ''
+        flags = '--language=' +  kwargs['language']
+        flags += ' --compiler=' + kwargs['compiler']
         
         _li = pyccel.__version__.split('.')
         _num = int(_li[0])*100 + int(_li[1])*10 + int(_li[2])
         if _num >= 180:
             flags += ' --conda-warnings off'
             
+        if kwargs['verbose']:
+            flags += ' --verbose'
+        
         print('\nCompiling gvec-to-python kernels ...')
         subprocess.run(['make', 
                         '-f',