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#### Brain Network
Code for showing connectivity graphs
Started by using the BrainNetwiewer:
## About Brain Network code repository:
This repository contains all the code and data used within the following manuscript:
[**A Functional Connectome of Taste Processing in the Macaque Monkey**](TODO: XX)
Renee Hartig, Ali Karimi, Henry C. Evrard
This code repository was developed at the Max Planck Insitute for brain research (2015-2020)
## How to get the code repository:
You can download the complete code repository via the Download option on top of this page (cloud icon).
Alternatively, you can type one of the following commands in your command prompt:
HTTPS:
```
git clone https://gitlab.mpcdf.mpg.de/alik/Brain_network.git
```
SSH:
```
git clone git@gitlab.mpcdf.mpg.de:alik/Brain_network.git
```
Make sure you have [git](https://git-scm.com/downloads) installed. In addition, you need to configure your
[SSH](https://gitlab.mpcdf.mpg.de/help/ssh/README) keys in case you do not want to use HTTPS.
You can then set your matlab working directory to this code repository and run the following command:
```
>> startup
```
This should add the necessary paths to you matlab working environment.
## Requirements:
This code repository is partly written in [MATLAB](https://www.mathworks.com/) and tested using version R2019a.
In addition to the basic matlab installation, specific segments of the code might require the following packages to be installed as well:
* TODO: XX
The python code uses the package [brainNetwork]. To install:
TODO: XX
Additionally, the circle diagrams are written in R:
## General purpose
The purpose of this repository is to provide an easily accessible MATLAB, Python and Rinterface for generation of the figures used in the manuscript.
## Contents
This code repository is organized into [MATLAB packages](https://www.mathworks.com/help/matlab/matlab_oop/scoping-classes-with-packages.html) (folders starting with "+")
To access the methods/scripts of each package you need to use dot notation. Here's some examples:
```
>> mypackage.script
>> mypackage.mysubpackage.script
```
Here's a list of the contents:
* TODO: XX
## Authors
The Apical Tuft Paper code repository was developed by
* **Ali Karimi**
With significant contributions by
* **Renee Hartig**
## License
This project is licensed under the [MIT license](LICENSE).
Copyright (c) 2022
https://www.nitrc.org/projects/bnv/
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