Make sure you have [git](https://git-scm.com/downloads) installed. In addition, you need to configure your
[SSH](https://gitlab.mpcdf.mpg.de/help/ssh/README) keys in case you do not want to use HTTPS.
You can then set your matlab working directory to this code repository and run the following command:
```
>> startup
```
This should add the necessary paths to you matlab working environment.
## Requirements:
This code repository is partly written in [MATLAB](https://www.mathworks.com/) and tested using version R2019a.
In addition to the basic matlab installation, specific segments of the code might require the following packages to be installed as well:
* TODO: XX
The python code uses the package [brainNetwork]. To install:
TODO: XX
Additionally, the circle diagrams are written in R:
## General purpose
The purpose of this repository is to provide an easily accessible MATLAB, Python and Rinterface for generation of the figures used in the manuscript.
## Contents
This code repository is organized into [MATLAB packages](https://www.mathworks.com/help/matlab/matlab_oop/scoping-classes-with-packages.html)(folders starting with "+")
To access the methods/scripts of each package you need to use dot notation. Here's some examples:
```
>> mypackage.script
>> mypackage.mysubpackage.script
```
Here's a list of the contents:
* TODO: XX
## Authors
The Apical Tuft Paper code repository was developed by
***Ali Karimi**
With significant contributions by
***Renee Hartig**
## License
This project is licensed under the [MIT license](LICENSE).