not save the partition

python/brainNetwork/plotting_scripts/community_functional.py

@@ -10,7 +10,7 @@ import community as community_louvain
 
 from brainNetwork.util.path import get_local_datadir
 
-csv_dir = os.path.join(get_local_datadir(),'connectivity_paper.csv')
+csv_dir = os.path.join(get_local_datadir(),'connectivity_tanh.csv')
 connect_mat = pd.read_csv(csv_dir, index_col=0)
 # Get the graph
 G = nx.convert_matrix.from_pandas_adjacency(connect_mat)
@@ -20,7 +20,8 @@ print(f"The modularity is: {community_louvain.modularity(partition_louvian,G)}")
 # Make the dict into a data frame
 partition_pd = pd.DataFrame(partition_louvian, index = ['partition'])
 assert all(partition_pd.columns == connect_mat.columns)
-partition_pd.to_csv(os.path.join(get_local_datadir(), 'partition.csv'))
+# Write to CSV file
+#partition_pd.to_csv(os.path.join(get_local_datadir(), 'partition.csv'))
 # reorder columns and rows
 reorder_indices = partition_pd.columns[np.squeeze(np.argsort(partition_pd.values))]
 connect_mat = connect_mat.reindex(columns = reorder_indices, index = reorder_indices)