add conversion functionality to bin-to-hdf5 tool

bfps/cpp/full_code/native_binary_to_hdf5.cpp

@@ -12,18 +12,40 @@ int native_binary_to_hdf5<rnumber>::initialize(void)
             nx, ny, nz,
             this->comm,
             DEFAULT_FFTW_FLAG);
+    this->vec_field->real_space_representation = false;
+    this->bin_IO = new field_binary_IO<rnumber, COMPLEX, THREE>(
+            this->vec_field->clayout->sizes,
+            this->vec_field->clayout->subsizes,
+            this->vec_field->clayout->starts,
+            this->vec_field->clayout->comm);
     return EXIT_SUCCESS;
 }
 
 template <typename rnumber>
 int native_binary_to_hdf5<rnumber>::work_on_current_iteration(void)
 {
+    char itername[16];
+    sprintf(itername, "i%.5x", this->iteration);
+    std::string native_binary_fname = (
+            this->simname +
+            std::string("_cvorticity_") +
+            std::string(itername));
+    this->bin_IO->read(
+            native_binary_fname,
+            this->vec_field->get_cdata());
+    this->vec_field->io(
+            (native_binary_fname +
+             std::string(".h5")),
+            "vorticity",
+            this->iteration,
+            false);
     return EXIT_SUCCESS;
 }
 
 template <typename rnumber>
 int native_binary_to_hdf5<rnumber>::finalize(void)
 {
+    delete this->bin_IO;
     delete this->vec_field;
     return EXIT_SUCCESS;
 }

bfps/cpp/full_code/native_binary_to_hdf5.hpp

@@ -33,6 +33,7 @@
 #include <vector>
 #include "base.hpp"
 #include "field.hpp"
+#include "field_binary_IO.hpp"
 #include "full_code/postprocess.hpp"
 
 template <typename rnumber>
@@ -41,6 +42,7 @@ class native_binary_to_hdf5: public postprocess
     public:
 
         field<rnumber, FFTW, THREE> *vec_field;
+        field_binary_IO<rnumber, COMPLEX, THREE> *bin_IO;
 
         native_binary_to_hdf5(
                 const MPI_Comm COMMUNICATOR,