update test

bfps/__init__.py

@@ -49,4 +49,5 @@ from host_information import host_info
 from .FluidConvert import FluidConvert
 from .FluidResize import FluidResize
 from .NavierStokes import NavierStokes
+from .NSVorticityEquation import NSVorticityEquation
 

bfps/_base.py

@@ -83,7 +83,6 @@ class _base(object):
                    'hid_t dset, memtype, space;\n' +
                    'char fname[256];\n' +
                    'hsize_t dims[1];\n' +
-                   #'char *string_data;\n' +
                    'char string_data[512];\n' +
                    'sprintf(fname, "%s.h5", simname);\n' +
                    'parameter_file = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT);\n')
@@ -95,15 +94,8 @@ class _base(object):
             elif type(parameters[key[i]]) == str:
                 src_txt += ('space = H5Dget_space(dset);\n' +
                             'memtype = H5Dget_type(dset);\n' +
-                            #'H5Sget_simple_extent_dims(space, dims, NULL);\n' +
-                            #'DEBUG_MSG("dims[0] = %ld\\n", dims[0]);\n' +
-                            #'string_data = (char*)malloc(512*sizeof(char));\n' +
-                            #'string_data = new char[512];\n' +
                             'H5Dread(dset, memtype, H5S_ALL, H5S_ALL, H5P_DEFAULT, &string_data);\n' +
                             'sprintf({0}, "%s", string_data);\n'.format(key[i]) +
-                            #'DEBUG_MSG("{0} = %s\\n", {0});\n'.format(key[i]) +
-                            #'delete[] string_data;\n' +
-                            #'free(string_data);\n'
                             'H5Sclose(space);\n' +
                             'H5Tclose(memtype);\n')
             elif type(parameters[key[i]]) == np.ndarray:

bfps/_fluid_base.py

@@ -417,7 +417,7 @@ class _fluid_particle_base(_code):
                 Kdata0,
                 self.parameters['nz'],
                 self.parameters['ny'],
-                self.parameters['nx'])
+                self.parameters['nx']).copy()
         if write_to_file:
             Kdata1.tofile(
                     os.path.join(self.work_dir,