add timing output to hdf5_tools

cpp/hdf5_tools.cpp

 #include "hdf5_tools.hpp"
+#include "scope_timer.hpp"
 #include <cfloat>
 #include <climits>
 
 int hdf5_tools::require_size_single_dataset(hid_t dset, int tsize)
 {
+    TIMEZONE("hdf5_tools::require_size_single_dataset");
     int ndims;
     hsize_t space;
     space = H5Dget_space(dset);
@@ -24,6 +26,7 @@ int hdf5_tools::require_size_single_dataset(hid_t dset, int tsize)
 
 int hdf5_tools::grow_single_dataset(hid_t dset, int tincrement)
 {
+    TIMEZONE("hdf5_tools::grow_single_dataset");
     int ndims;
     hsize_t space;
     space = H5Dget_space(dset);
@@ -48,6 +51,7 @@ herr_t hdf5_tools::require_size_dataset_visitor(
     const H5O_info_t *info,
     void *op_data)
 {
+    TIMEZONE("hdf5_tools::require_size_dataset_visitor");
     if (info->type == H5O_TYPE_DATASET)
     {
         hsize_t dset = H5Dopen(o_id, name, H5P_DEFAULT);
@@ -63,6 +67,7 @@ herr_t hdf5_tools::grow_dataset_visitor(
     const H5O_info_t *info,
     void *op_data)
 {
+    TIMEZONE("hdf5_tools::grow_dataset_visitor");
     if (info->type == H5O_TYPE_DATASET)
     {
         hsize_t dset = H5Dopen(o_id, name, H5P_DEFAULT);
@@ -78,6 +83,7 @@ int hdf5_tools::grow_file_datasets(
         const std::string group_name,
         int tincrement)
 {
+    TIMEZONE("hdf5_tools::grow_file_datasets");
     int file_problems = 0;
 
     hid_t group;
@@ -98,6 +104,7 @@ int hdf5_tools::require_size_file_datasets(
         const std::string group_name,
         int tsize)
 {
+    TIMEZONE("hdf5_tools::require_size_file_datasets");
     int file_problems = 0;
 
     hid_t group;
@@ -117,6 +124,7 @@ std::vector<number> hdf5_tools::read_vector(
         const hid_t group,
         const std::string dset_name)
 {
+    TIMEZONE("hdf5_tools::read_vector");
     std::vector<number> result;
     hsize_t vector_length;
     // first, read size of array
@@ -143,6 +151,7 @@ number hdf5_tools::read_value(
         const hid_t group,
         const std::string dset_name)
 {
+    TIMEZONE("hdf5_tools::read_value");
     number result;
     hid_t dset;
     hid_t mem_dtype;
@@ -177,6 +186,7 @@ std::vector<dtype> hdf5_tools::read_vector_with_single_rank(
         const hid_t file_id,
         const std::string dset_name)
 {
+    TIMEZONE("hdf5_tools::read_vector_with_single_rank");
     std::vector<dtype> data;
     int vector_size;
     if (myrank == rank_to_use)
@@ -208,6 +218,7 @@ std::string hdf5_tools::read_string(
         const hid_t group,
         const std::string dset_name)
 {
+    TIMEZONE("hdf5_tools::read_string");
     if (H5Lexists(group, dset_name.c_str(), H5P_DEFAULT))
     {
         hid_t dset = H5Dopen(group, dset_name.c_str(), H5P_DEFAULT);