Commit 665e1ec1 authored by Luka Stanisic's avatar Luka Stanisic
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doc: fixing GPUWORKLOAD formula and few other small fixes

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......@@ -15,7 +15,6 @@
\usepackage{graphicx}
\usepackage{amsfonts}
\usepackage{latexsym}
\usepackage[dvips]{color}
\usepackage{layout}
\usepackage{setspace}
......@@ -1396,7 +1395,7 @@ A starting point is to measure the CPU and GPU individually with
\texttt{BIOEM\_DEBUG\_OUTPUT=2; BIOEM\_DEBUG\_BREAK=4; GPU=0/1}
and compare the time of CPU to that of the GPU. Assuming that the CPU takes \texttt{c} seconds for the comparison, and the
GPU takes \texttt{g} second, a good starting point for \texttt{GPUWORKLOAD=[x]} is \texttt{x = 100 * g / (c + g)}.
GPU takes \texttt{g} second, a good starting point for \texttt{GPUWORKLOAD=[x]} is \texttt{x = 100 * c / (c + g)}.
\item On a single node, one should use OpenMP parallelization for many particle-images and few orientations; and MPI
parallelization for few particle-images and many orientations. Assume a system with \texttt{N} CPU cores, the command
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File mode changed from 100644 to 100755
......@@ -1328,7 +1328,7 @@ Unique-ID = {{ISI:000185731300001}},
@article{BioEM_server,
title = "BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images",
journal = "Comput. Phys. Commun.",
author = "Cossio, Pilar and Rohr, David and Baruffa, Fabio, and Rampp, Markus and Lindenstruth, Volker and Hummer, Gerhard",
author = "Cossio, Pilar and Rohr, David and Baruffa, Fabio and Rampp, Markus and Lindenstruth, Volker and Hummer, Gerhard",
year = "2016"
}
......
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