Tuttorial update

Tutorial/Euler_Angle_List

+2
     0.836000    1.369000    2.640000
    -1.375000    0.400000    3.018000

Tutorial_BioEM/MODEL_COMPARISION/Param_Input_ModelComparision

+##### Micrograph Parameters #######
 NUMBER_PIXELS 224
 PIXEL_SIZE 1.32
-GRIDPOINTS_ENVELOPE 3 
-START_ENVELOPE 0.000
-END_ENVELOPE 0.001
-GRIDPOINTS_PSF_PHASE 3
-START_PSF_PHASE 0.004
-END_PSF_PHASE 0.024
-GRIDPOINTS_PSF_AMP 1
-START_PSF_AMP 1.
-END_PSF_AMP 1.
-MAX_D_CENTER 20
-PIXEL_GRID_CENTER 2
+
+###### Sincs its a full atom structure #####
 NO_PROJECT_RADIUS
-QUATERNIONS
+
+##### Quaterion grid points: #######
+USE_QUATERNIONS
+
+##### Constrast transfer integration: #######
+CTF_B_FACTOR 100.0 300.5 8
+CTF_DEFOCUS 1.0 6.0 5
+CTF_AMPLITUDE 0.1 0.1 1
+
+##### Center displacement: #######
+DISPLACE_CENTER 10 2

Tutorial_BioEM/Param_Print_MAP

+##### Micrograph Parameters #######
+
 NUMBER_PIXELS 220
 PIXEL_SIZE 1.77
-BEST_AMP 1
+
+######## Center displacement ################
 BEST_DX -10
 BEST_DY 5
+
+######## Normalization and Offset ################
 BEST_NORM 1
 BEST_OFFSET 0
-BEST_PHASE 0.00068
-BEST_ENVELOPE 0.03
-WITHNOISE 5.476
+
+######## Euler Angles ################
 BEST_ALPHA -0.464793
 BEST_GAMMA -0.409391
 BEST_BETA 1.97283
-#PRINT_ROTATED_MODELS
+
+######## Using PSF ################
+#USE_PSF
+BEST_PSF_ENVELOPE 0.0002
+BEST_PSF_PHASE 0.004
+BEST_PSF_AMP 1
+
+##### Using CTF #######
+BEST_CTF_B_FACTOR 200.5
+BEST_CTF_DEFOCUS 3.5
+BEST_CTF_AMP 0.3
+
+######## ADDING NOISE ###########
+WITHNOISE 5.476
+
+########## Printing the 3d Model rotation ###########
+PRINT_ROTATED_MODELS