Commit 9ab3d025 authored by Serhiy Mochalskyy's avatar Serhiy Mochalskyy

First commit

parent 72921d43
This diff is collapsed.
cp: cannot stat ‘boundary.txt’: No such file or directory
cp: cannot stat ‘coil.txt’: No such file or directory
cp: cannot stat ‘input’: No such file or directory
cp: cannot stat ‘boundary.txt’: No such file or directory
cp: cannot stat ‘coil.txt’: No such file or directory
cp: cannot stat ‘input’: No such file or directory
cp: cannot stat ‘boundary.txt’: No such file or directory
cp: cannot stat ‘coil.txt’: No such file or directory
cp: cannot stat ‘input’: No such file or directory
cp: cannot stat ‘boundary.txt’: No such file or directory
cp: cannot stat ‘coil.txt’: No such file or directory
cp: cannot stat ‘input’: No such file or directory
cp: cannot stat ‘boundary.txt’: No such file or directory
cp: cannot stat ‘coil.txt’: No such file or directory
cp: cannot stat ‘input’: No such file or directory
=>> PBS: job killed: walltime 6901 exceeded limit 6900
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002B767871B100 Unknown Unknown Unknown
libpthread-2.17.s 00002B767871A3A4 __fcntl Unknown Unknown
libmpi.so.12 00002B76790557F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002B7678DA6C26 Unknown Unknown Unknown
libmpi.so.12 00002B76792675B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002B76789BE35B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002B767A117B15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002B0EDD602100 Unknown Unknown Unknown
libpthread-2.17.s 00002B0EDD6013A4 __fcntl Unknown Unknown
libmpi.so.12 00002B0EDDF3C7F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002B0EDDC8DC26 Unknown Unknown Unknown
libmpi.so.12 00002B0EDE14E5B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002B0EDD8A535B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002B0EDEFFEB15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002BAAA079F100 Unknown Unknown Unknown
parallel_IO.out 000000000042A1F0 Unknown Unknown Unknown
libpthread-2.17.s 00002BAAA079F100 Unknown Unknown Unknown
libpthread-2.17.s 00002BAAA079E3A4 __fcntl Unknown Unknown
libmpi.so.12 00002BAAA10D97F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002BAAA0E2AC26 Unknown Unknown Unknown
libmpi.so.12 00002BAAA12EB5B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002BAAA0A4235B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002BAAA219BB15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002AAD1E391100 Unknown Unknown Unknown
parallel_IO.out 000000000042A1F0 Unknown Unknown Unknown
libpthread-2.17.s 00002AAD1E391100 Unknown Unknown Unknown
libpthread-2.17.s 00002AAD1E3903A4 __fcntl Unknown Unknown
libmpi.so.12 00002AAD1ECCB7F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002AAD1EA1CC26 Unknown Unknown Unknown
libmpi.so.12 00002AAD1EEDD5B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002AAD1E63435B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002AAD1FD8DB15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002AE424A88100 Unknown Unknown Unknown
libpthread-2.17.s 00002AE424A873A4 __fcntl Unknown Unknown
libmpi.so.12 00002AE4253C27F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002AE425113C26 Unknown Unknown Unknown
libmpi.so.12 00002AE4255D45B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002AE424D2B35B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002AE426484B15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
parallel_IO.out 00000000004A6831 Unknown Unknown Unknown
parallel_IO.out 00000000004A496B Unknown Unknown Unknown
parallel_IO.out 0000000000471284 Unknown Unknown Unknown
parallel_IO.out 0000000000471096 Unknown Unknown Unknown
parallel_IO.out 0000000000450879 Unknown Unknown Unknown
parallel_IO.out 000000000042A35C Unknown Unknown Unknown
libpthread-2.17.s 00002B047E6BD100 Unknown Unknown Unknown
libpthread-2.17.s 00002B047E6BC3A4 __fcntl Unknown Unknown
libmpi.so.12 00002B047EFF77F3 ADIOI_Set_lock Unknown Unknown
libmpi.so.12.0 00002B047ED48C54 Unknown Unknown Unknown
libmpi.so.12 00002B047F2095B7 MPI_File_write Unknown Unknown
libmpifort.so.12. 00002B047E96035B MPI_FILE_WRITE Unknown Unknown
parallel_IO.out 00000000004058EA Unknown Unknown Unknown
parallel_IO.out 0000000000404FDE Unknown Unknown Unknown
libc-2.17.so 00002B04800B9B15 __libc_start_main Unknown Unknown
parallel_IO.out 0000000000404EE9 Unknown Unknown Unknown
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=04:55:00
#PBS -l select=1:ncpus=36:mpiprocs=36:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
Total wall clock time including output= 3.43932010670503 hours
=======================================================================
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=04:55:00
#PBS -l select=1:ncpus=36:mpiprocs=36:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
Total wall clock time including output= 0.373999470538563 hours
=======================================================================
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=04:55:00
#PBS -l select=1:ncpus=36:mpiprocs=6:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
Total wall clock time including output= 0.117738883031739 hours
=======================================================================
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=01:55:00
#PBS -l select=1:ncpus=36:mpiprocs=2:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
Total wall clock time = 0.370842863917351 hours
=======================================================================
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=02:55:00
#PBS -l select=1:ncpus=36:mpiprocs=6:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO_64.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL_64,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
#!/bin/bash
#PBS -q xfuaprod
#PBS -l walltime=01:55:00
#PBS -l select=1:ncpus=36:mpiprocs=6:mem=100GB
#PBS -j oe
#PBS -A FUSIO_HLST
#PBS -N MPI_IO
#PBS -m ae
#PBS -M serhiy.mochalskyy@ipp.mpg.de
cd $PBS_O_WORKDIR
FOLDER_NAME=${PBS_JOBNAME}_${PBS_JOBID}
BINARY=parallel_IO.out
mkdir $FOLDER_NAME
cp {boundary.txt,coil.txt,input,submit_script_marconi_STARWALL,$BINARY} $FOLDER_NAME
#cp {input,submit_script_marconi,$BINARY} $FOLDER_NAME
cd $FOLDER_NAME
module load intel intelmpi mkl
#export FOR_PRINT=ok.out
#export FOR_PRINT=/dev/null
#mpirun -genvlist FOR_PRINT ./STARWALL_JOREK_Linux>input
#cat /proc/sys/kernel/pid_max
mpirun ./$BINARY>my_output
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