From ad685151fdc9e4dd51718bfbe7869c582634e24f Mon Sep 17 00:00:00 2001
From: RealPolitiX <xrpatrick@gmail.com>
Date: Fri, 10 May 2019 12:25:59 +0200
Subject: [PATCH] Added Zenodo record
---
mpesparser/__init__.py | 14 +++-----------
tests/mpes.metadata_redacted.json | 2 ++
2 files changed, 5 insertions(+), 11 deletions(-)
diff --git a/mpesparser/__init__.py b/mpesparser/__init__.py
index 83158d7..bc13691 100644
--- a/mpesparser/__init__.py
+++ b/mpesparser/__init__.py
@@ -59,10 +59,7 @@ class MPESParser(AbstractBaseParser):
with open(filepath, 'rt') as f:
data = json.load(f)
# print(data)
-
- # # You need to open sections before you can add values or sub sections to it.
- # # The returned 'gid' can be used to reference a specific section if multiple
- # # sections of the same type are opened.
+
root_gid = backend.openSection('section_experiment')
# # Values do not necessarely have to be read from the parsed file.
# # The backend will check the type of the given value agains the metadata definition.
@@ -70,8 +67,8 @@ class MPESParser(AbstractBaseParser):
#
# # Read data .
# data_gid = backend.openSection('section_data')
- # backend.addValue('data_repository_name', 'zenodo.org')
- # backend.addValue('data_repository_url', 'https://zenodo.org/path/to/mydata')
+ backend.addValue('data_repository_name', data.get('data_repository_name'))
+ backend.addValue('data_repository_url', data.get('data_repository_url'))
# backend.addValue('data_preview_url', 'https://www.physicsforums.com/insights/wp-content/uploads/2015/09/fem.jpg')
# backend.closeSection('section_data', data_gid)
@@ -162,11 +159,6 @@ class MPESParser(AbstractBaseParser):
backend.addValue('sample_substrate_state_of_matter', data.get('substrate_state'))
backend.addValue('sample_substrate_vendor', data.get('substrate_vendor'))
- # To add arrays (vectors, matrices, etc.) use addArrayValues and provide a
- # numpy array. The shape of the numpy array must match the shape defined in
- # the respective metadata definition.
-
-
# Close sections in the reverse order
# backend.closeSection('section_data', data_gid)
backend.closeSection('section_experiment', root_gid)
diff --git a/tests/mpes.metadata_redacted.json b/tests/mpes.metadata_redacted.json
index 299d301..40ec54c 100644
--- a/tests/mpes.metadata_redacted.json
+++ b/tests/mpes.metadata_redacted.json
@@ -1,4 +1,6 @@
{
+ "data_repository_name": "zenodo.org",
+ "data_repository_url": "https://zenodo.org/deposit/2704788",
"experiment_method": "multidimensional photoemission spectroscopy",
"experiment_method_abbrv": "MPES",
"experiment_location": "Hamburg, Germany",
--
GitLab