1. 29 May, 2020 4 commits
  2. 28 May, 2020 6 commits
  3. 27 May, 2020 3 commits
  4. 26 May, 2020 2 commits
  5. 20 May, 2020 2 commits
    • Philipp Schubert's avatar
      merge dev in ptconv · 5003e197
      Philipp Schubert authored
      5003e197
    • Philipp Schubert's avatar
      major refactoring [WIP] · b1f93191
      Philipp Schubert authored
      - add on the fly view rendering for spines, cell types and morphology embedding
      - remove support for cell type inference with large views
      - improve speed and quality of meshing (isotropic downsampling)
      - add a more flexible image processing during object extraction (e.g. morphology operation and watershed)
      - remove unused code
      - implement initial frame work for point based models
      
      TODO:
      - generate syn_ssv meshes densely, based on a yet to be implemented syn_ssv segmentation KD
      - use syn_ssv channel instead of sj for views
      - on the fly rendering for glia separation
      - support point based models
      b1f93191
  6. 16 May, 2020 5 commits
  7. 15 May, 2020 1 commit
  8. 14 May, 2020 1 commit
  9. 03 May, 2020 1 commit
  10. 02 May, 2020 1 commit
  11. 01 May, 2020 4 commits
  12. 30 Apr, 2020 2 commits
  13. 28 Apr, 2020 1 commit
  14. 23 Apr, 2020 2 commits
    • Philipp Schubert's avatar
      Fix test_render.py · 9620d956
      Philipp Schubert authored
      9620d956
    • Philipp Schubert's avatar
      general and performance improvements, transition to pytorch script model files and version tracking · a503af82
      Philipp Schubert authored
      * improve dataset_analysis speed by better data handling.
      * write syconn version during installation and use it in data set config files.
      * fix #29 freeze issue which appeared during rendering in environments (environment.yml) recently built from scratch; caused by sklearn.decompostion.PCA called multiple times within short time intervals; fixed by using a custom numpy PCA implementation (`_calc_pca_components` in meshes.py).
      * change dependency restrictions.
      *
      * [WIP] remove elektronn2 model support.
      * [WIP] transition to pytorch script, currently missing: sub-cellular structures (in training), mylein (in training).
      * [WIP] collect results of dataset_analysis with batch jobs via SLURM.
      a503af82
  15. 22 Apr, 2020 1 commit
  16. 21 Apr, 2020 1 commit
  17. 18 Apr, 2020 2 commits
  18. 15 Apr, 2020 1 commit