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Update dependencies

See merge request pschuber/SyConn!41

change to working elektronn3 branch, update and improve dependency restrictions, remove deprecation warnings

# Conflicts:
#	scripts/dataset_specific/start_j0251_gce.py
#	scripts/misc/timings.py
#	scripts/point_party/eval_celltype_j0251.py
#	scripts/training/launch_trainer.py
#	syconn/backend/storage.py
#	syconn/cnn/TrainData.py
#	syconn/cnn/cnn_celltype_ptcnv_j0251.py
#	syconn/exec/exec_inference.py
#	syconn/exec/exec_init.py
#	syconn/exec/exec_skeleton.py
#	syconn/exec/exec_syns.py
#	syconn/extraction/cs_extraction_steps.py
#	syconn/extraction/cs_processing_steps.py
#	syconn/handler/prediction_pts.py
#	syconn/mp/batchjob_utils.py
#	syconn/proc/ssd_proc.py
#	syconn/proc/stats.py
#	syconn/reps/segmentation.py
#	syconn/reps/super_segmentation_dataset.py
#	syconn/reps/super_segmentation_object.py

er and golgi are temporarily excluded from existing cellorganelles in config file, to ensure everything can run through without predicting er and golgi as the model is still in development.

ER- and Golgi-prediction

See merge request pschuber/SyConn!37

# Conflicts:
#   syconn/handler/config.py

Bugfix, making it possible to use certain expressions like e.g. _test_ in the working directory name.

* add `ValueError` to `SSO.load_mesh()` in case object types was not correctly initialized in class
* fix issue for some object types in `mesh2kzip` during mesh loading with `mesh_caching=False`
* minor changes documentation
* changed default kwarg `mag` of  `map_myelin2coords` from 1 to 4

Adding of placeholders for 'er' and 'golgi' in for (super-segmentation-dataset-) versions in config.yml. start.py runs through without errors like this.
Also suggestion for prediction-type determination in prediction_pts.py (only as comment).

Small changes in config.yml. Step 2/9 in start.py seems to work well like this. Errors occur in step 4.

Implementation of function for golgi-prediction (predict_golgi) and method for golgi-model-import (mpath_golgi).

update acknowledgements; refactor `syn_sign_ratio_celltype` to allow caching of results; update cmn with multi-views

remove legacy code; add prototype for `cs_ssv` generation; fix `VoxelStorageDyn.get_voxel_data_cubed()`