From 0055897f744fdc040c5de01a078179d91ebd7631 Mon Sep 17 00:00:00 2001 From: Berk Onat <b.onat@warwick.ac.uk> Date: Sat, 31 Mar 2018 16:36:22 +0100 Subject: [PATCH] Fixing NoneType file_format in load_mdanalysis. --- common/python/nomadcore/md_data_access/MDDataAccess.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/common/python/nomadcore/md_data_access/MDDataAccess.py b/common/python/nomadcore/md_data_access/MDDataAccess.py index 4e14ba8..d210402 100644 --- a/common/python/nomadcore/md_data_access/MDDataAccess.py +++ b/common/python/nomadcore/md_data_access/MDDataAccess.py @@ -3653,7 +3653,7 @@ class MDDataAccess(object): return topology - def load_mdanalysis_topology(self, file_format): + def load_mdanalysis_topology(self, file_format=None): """ Support level for MDAnalysis package If filename is given, we try loading the format, if its a trajectory @@ -3666,7 +3666,10 @@ class MDDataAccess(object): topology = None universe = None - fileformat = re.sub('[.]', '', file_format) + if file_format: + fileformat = re.sub('[.]', '', file_format) + else: + fileformat = file_format top=self.topofile if top: try: -- GitLab