From d397d505a6043b372815c83b82f17edef638d8f2 Mon Sep 17 00:00:00 2001 From: Berk Onat Date: Fri, 20 Oct 2017 14:57:29 +0100 Subject: [PATCH] First compiling version with setup.py without libmolfile_plugins.a --- pymolfile/__init__.pyc | Bin 612 -> 640 bytes pymolfile/molfile/_libpymolfile.so | Bin 801448 -> 801448 bytes .../Contents/Resources/DWARF/_libpymolfile.so | Bin 205049 -> 205053 bytes pymolfile/molfile/compile.sh | 2 +- pymolfile/molfile/libpymolfile_wrap.cpp | 4465 +++++++++++++++++ pymolfile/molfile/pymolfile.cxx | 740 +++ pymolfile/molfile/pymolfile.h | 17 +- setup.py | 80 +- 8 files changed, 5267 insertions(+), 37 deletions(-) create mode 100644 pymolfile/molfile/libpymolfile_wrap.cpp create mode 100644 pymolfile/molfile/pymolfile.cxx diff --git a/pymolfile/__init__.pyc b/pymolfile/__init__.pyc index 7ce45ebdb5c41ab0d0c2673da3189b405f237d58..24a3ba9da2eb1cdc0913e40427ff19bd48669b46 100644 GIT binary patch delta 95 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T(t)); pointer = tmp; return *this; } + operator T&() const { return *pointer.ptr; } + T *operator&() { return pointer.ptr; } +}; + +template T SwigValueInit() { + return T(); +} +#endif + +/* ----------------------------------------------------------------------------- + * This section contains generic SWIG labels for method/variable + * declarations/attributes, and other compiler dependent labels. + * ----------------------------------------------------------------------------- */ + +/* template workaround for compilers that cannot correctly implement the C++ standard */ +#ifndef SWIGTEMPLATEDISAMBIGUATOR +# if defined(__SUNPRO_CC) && (__SUNPRO_CC <= 0x560) +# define SWIGTEMPLATEDISAMBIGUATOR template +# elif defined(__HP_aCC) +/* Needed even with `aCC -AA' when `aCC -V' reports HP ANSI C++ B3910B A.03.55 */ +/* If we find a maximum version that requires this, the test would be __HP_aCC <= 35500 for A.03.55 */ +# define SWIGTEMPLATEDISAMBIGUATOR template +# else +# define SWIGTEMPLATEDISAMBIGUATOR +# endif +#endif + +/* inline attribute */ +#ifndef SWIGINLINE +# if defined(__cplusplus) || (defined(__GNUC__) && !defined(__STRICT_ANSI__)) +# define SWIGINLINE inline +# else +# define SWIGINLINE +# endif +#endif + +/* attribute recognised by some compilers to avoid 'unused' warnings */ +#ifndef SWIGUNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define SWIGUNUSED __attribute__ ((__unused__)) +# else +# define SWIGUNUSED +# endif +# elif defined(__ICC) +# define SWIGUNUSED __attribute__ ((__unused__)) +# else +# define SWIGUNUSED +# endif +#endif + +#ifndef SWIG_MSC_UNSUPPRESS_4505 +# if defined(_MSC_VER) +# pragma warning(disable : 4505) /* unreferenced local function has been removed */ +# endif +#endif + +#ifndef SWIGUNUSEDPARM +# ifdef __cplusplus +# define SWIGUNUSEDPARM(p) +# else +# define SWIGUNUSEDPARM(p) p SWIGUNUSED +# endif +#endif + +/* internal SWIG method */ +#ifndef SWIGINTERN +# define SWIGINTERN static SWIGUNUSED +#endif + +/* internal inline SWIG method */ +#ifndef SWIGINTERNINLINE +# define SWIGINTERNINLINE SWIGINTERN SWIGINLINE +#endif + +/* exporting methods */ +#if defined(__GNUC__) +# if (__GNUC__ >= 4) || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) +# ifndef GCC_HASCLASSVISIBILITY +# define GCC_HASCLASSVISIBILITY +# endif +# endif +#endif + +#ifndef SWIGEXPORT +# if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__) +# if defined(STATIC_LINKED) +# define SWIGEXPORT +# else +# define SWIGEXPORT __declspec(dllexport) +# endif +# else +# if defined(__GNUC__) && defined(GCC_HASCLASSVISIBILITY) +# define SWIGEXPORT __attribute__ ((visibility("default"))) +# else +# define SWIGEXPORT +# endif +# endif +#endif + +/* calling conventions for Windows */ +#ifndef SWIGSTDCALL +# if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__) +# define SWIGSTDCALL __stdcall +# else +# define SWIGSTDCALL +# endif +#endif + +/* Deal with Microsoft's attempt at deprecating C standard runtime functions */ +#if !defined(SWIG_NO_CRT_SECURE_NO_DEPRECATE) && defined(_MSC_VER) && !defined(_CRT_SECURE_NO_DEPRECATE) +# define _CRT_SECURE_NO_DEPRECATE +#endif + +/* Deal with Microsoft's attempt at deprecating methods in the standard C++ library */ +#if !defined(SWIG_NO_SCL_SECURE_NO_DEPRECATE) && defined(_MSC_VER) && !defined(_SCL_SECURE_NO_DEPRECATE) +# define _SCL_SECURE_NO_DEPRECATE +#endif + +/* Deal with Apple's deprecated 'AssertMacros.h' from Carbon-framework */ +#if defined(__APPLE__) && !defined(__ASSERT_MACROS_DEFINE_VERSIONS_WITHOUT_UNDERSCORES) +# define __ASSERT_MACROS_DEFINE_VERSIONS_WITHOUT_UNDERSCORES 0 +#endif + +/* Intel's compiler complains if a variable which was never initialised is + * cast to void, which is a common idiom which we use to indicate that we + * are aware a variable isn't used. So we just silence that warning. + * See: https://github.com/swig/swig/issues/192 for more discussion. + */ +#ifdef __INTEL_COMPILER +# pragma warning disable 592 +#endif + + +#if defined(_DEBUG) && defined(SWIG_PYTHON_INTERPRETER_NO_DEBUG) +/* Use debug wrappers with the Python release dll */ +# undef _DEBUG +# include +# define _DEBUG +#else +# include +#endif + +/* ----------------------------------------------------------------------------- + * swigrun.swg + * + * This file contains generic C API SWIG runtime support for pointer + * type checking. + * ----------------------------------------------------------------------------- */ + +/* This should only be incremented when either the layout of swig_type_info changes, + or for whatever reason, the runtime changes incompatibly */ +#define SWIG_RUNTIME_VERSION "4" + +/* define SWIG_TYPE_TABLE_NAME as "SWIG_TYPE_TABLE" */ +#ifdef SWIG_TYPE_TABLE +# define SWIG_QUOTE_STRING(x) #x +# define SWIG_EXPAND_AND_QUOTE_STRING(x) SWIG_QUOTE_STRING(x) +# define SWIG_TYPE_TABLE_NAME SWIG_EXPAND_AND_QUOTE_STRING(SWIG_TYPE_TABLE) +#else +# define SWIG_TYPE_TABLE_NAME +#endif + +/* + You can use the SWIGRUNTIME and SWIGRUNTIMEINLINE macros for + creating a static or dynamic library from the SWIG runtime code. + In 99.9% of the cases, SWIG just needs to declare them as 'static'. + + But only do this if strictly necessary, ie, if you have problems + with your compiler or suchlike. +*/ + +#ifndef SWIGRUNTIME +# define SWIGRUNTIME SWIGINTERN +#endif + +#ifndef SWIGRUNTIMEINLINE +# define SWIGRUNTIMEINLINE SWIGRUNTIME SWIGINLINE +#endif + +/* Generic buffer size */ +#ifndef SWIG_BUFFER_SIZE +# define SWIG_BUFFER_SIZE 1024 +#endif + +/* Flags for pointer conversions */ +#define SWIG_POINTER_DISOWN 0x1 +#define SWIG_CAST_NEW_MEMORY 0x2 + +/* Flags for new pointer objects */ +#define SWIG_POINTER_OWN 0x1 + + +/* + Flags/methods for returning states. + + The SWIG conversion methods, as ConvertPtr, return an integer + that tells if the conversion was successful or not. And if not, + an error code can be returned (see swigerrors.swg for the codes). + + Use the following macros/flags to set or process the returning + states. + + In old versions of SWIG, code such as the following was usually written: + + if (SWIG_ConvertPtr(obj,vptr,ty.flags) != -1) { + // success code + } else { + //fail code + } + + Now you can be more explicit: + + int res = SWIG_ConvertPtr(obj,vptr,ty.flags); + if (SWIG_IsOK(res)) { + // success code + } else { + // fail code + } + + which is the same really, but now you can also do + + Type *ptr; + int res = SWIG_ConvertPtr(obj,(void **)(&ptr),ty.flags); + if (SWIG_IsOK(res)) { + // success code + if (SWIG_IsNewObj(res) { + ... + delete *ptr; + } else { + ... + } + } else { + // fail code + } + + I.e., now SWIG_ConvertPtr can return new objects and you can + identify the case and take care of the deallocation. Of course that + also requires SWIG_ConvertPtr to return new result values, such as + + int SWIG_ConvertPtr(obj, ptr,...) { + if () { + if () { + *ptr = ; + return SWIG_NEWOBJ; + } else { + *ptr = ; + return SWIG_OLDOBJ; + } + } else { + return SWIG_BADOBJ; + } + } + + Of course, returning the plain '0(success)/-1(fail)' still works, but you can be + more explicit by returning SWIG_BADOBJ, SWIG_ERROR or any of the + SWIG errors code. + + Finally, if the SWIG_CASTRANK_MODE is enabled, the result code + allows to return the 'cast rank', for example, if you have this + + int food(double) + int fooi(int); + + and you call + + food(1) // cast rank '1' (1 -> 1.0) + fooi(1) // cast rank '0' + + just use the SWIG_AddCast()/SWIG_CheckState() +*/ + +#define SWIG_OK (0) +#define SWIG_ERROR (-1) +#define SWIG_IsOK(r) (r >= 0) +#define SWIG_ArgError(r) ((r != SWIG_ERROR) ? r : SWIG_TypeError) + +/* The CastRankLimit says how many bits are used for the cast rank */ +#define SWIG_CASTRANKLIMIT (1 << 8) +/* The NewMask denotes the object was created (using new/malloc) */ +#define SWIG_NEWOBJMASK (SWIG_CASTRANKLIMIT << 1) +/* The TmpMask is for in/out typemaps that use temporal objects */ +#define SWIG_TMPOBJMASK (SWIG_NEWOBJMASK << 1) +/* Simple returning values */ +#define SWIG_BADOBJ (SWIG_ERROR) +#define SWIG_OLDOBJ (SWIG_OK) +#define SWIG_NEWOBJ (SWIG_OK | SWIG_NEWOBJMASK) +#define SWIG_TMPOBJ (SWIG_OK | SWIG_TMPOBJMASK) +/* Check, add and del mask methods */ +#define SWIG_AddNewMask(r) (SWIG_IsOK(r) ? (r | SWIG_NEWOBJMASK) : r) +#define SWIG_DelNewMask(r) (SWIG_IsOK(r) ? (r & ~SWIG_NEWOBJMASK) : r) +#define SWIG_IsNewObj(r) (SWIG_IsOK(r) && (r & SWIG_NEWOBJMASK)) +#define SWIG_AddTmpMask(r) (SWIG_IsOK(r) ? (r | SWIG_TMPOBJMASK) : r) +#define SWIG_DelTmpMask(r) (SWIG_IsOK(r) ? (r & ~SWIG_TMPOBJMASK) : r) +#define SWIG_IsTmpObj(r) (SWIG_IsOK(r) && (r & SWIG_TMPOBJMASK)) + +/* Cast-Rank Mode */ +#if defined(SWIG_CASTRANK_MODE) +# ifndef SWIG_TypeRank +# define SWIG_TypeRank unsigned long +# endif +# ifndef SWIG_MAXCASTRANK /* Default cast allowed */ +# define SWIG_MAXCASTRANK (2) +# endif +# define SWIG_CASTRANKMASK ((SWIG_CASTRANKLIMIT) -1) +# define SWIG_CastRank(r) (r & SWIG_CASTRANKMASK) +SWIGINTERNINLINE int SWIG_AddCast(int r) { + return SWIG_IsOK(r) ? ((SWIG_CastRank(r) < SWIG_MAXCASTRANK) ? (r + 1) : SWIG_ERROR) : r; +} +SWIGINTERNINLINE int SWIG_CheckState(int r) { + return SWIG_IsOK(r) ? SWIG_CastRank(r) + 1 : 0; +} +#else /* no cast-rank mode */ +# define SWIG_AddCast(r) (r) +# define SWIG_CheckState(r) (SWIG_IsOK(r) ? 1 : 0) +#endif + + +#include + +#ifdef __cplusplus +extern "C" { +#endif + +typedef void *(*swig_converter_func)(void *, int *); +typedef struct swig_type_info *(*swig_dycast_func)(void **); + +/* Structure to store information on one type */ +typedef struct swig_type_info { + const char *name; /* mangled name of this type */ + const char *str; /* human readable name of this type */ + swig_dycast_func dcast; /* dynamic cast function down a hierarchy */ + struct swig_cast_info *cast; /* linked list of types that can cast into this type */ + void *clientdata; /* language specific type data */ + int owndata; /* flag if the structure owns the clientdata */ +} swig_type_info; + +/* Structure to store a type and conversion function used for casting */ +typedef struct swig_cast_info { + swig_type_info *type; /* pointer to type that is equivalent to this type */ + swig_converter_func converter; /* function to cast the void pointers */ + struct swig_cast_info *next; /* pointer to next cast in linked list */ + struct swig_cast_info *prev; /* pointer to the previous cast */ +} swig_cast_info; + +/* Structure used to store module information + * Each module generates one structure like this, and the runtime collects + * all of these structures and stores them in a circularly linked list.*/ +typedef struct swig_module_info { + swig_type_info **types; /* Array of pointers to swig_type_info structures that are in this module */ + size_t size; /* Number of types in this module */ + struct swig_module_info *next; /* Pointer to next element in circularly linked list */ + swig_type_info **type_initial; /* Array of initially generated type structures */ + swig_cast_info **cast_initial; /* Array of initially generated casting structures */ + void *clientdata; /* Language specific module data */ +} swig_module_info; + +/* + Compare two type names skipping the space characters, therefore + "char*" == "char *" and "Class" == "Class", etc. + + Return 0 when the two name types are equivalent, as in + strncmp, but skipping ' '. +*/ +SWIGRUNTIME int +SWIG_TypeNameComp(const char *f1, const char *l1, + const char *f2, const char *l2) { + for (;(f1 != l1) && (f2 != l2); ++f1, ++f2) { + while ((*f1 == ' ') && (f1 != l1)) ++f1; + while ((*f2 == ' ') && (f2 != l2)) ++f2; + if (*f1 != *f2) return (*f1 > *f2) ? 1 : -1; + } + return (int)((l1 - f1) - (l2 - f2)); +} + +/* + Check type equivalence in a name list like ||... + Return 0 if equal, -1 if nb < tb, 1 if nb > tb +*/ +SWIGRUNTIME int +SWIG_TypeCmp(const char *nb, const char *tb) { + int equiv = 1; + const char* te = tb + strlen(tb); + const char* ne = nb; + while (equiv != 0 && *ne) { + for (nb = ne; *ne; ++ne) { + if (*ne == '|') break; + } + equiv = SWIG_TypeNameComp(nb, ne, tb, te); + if (*ne) ++ne; + } + return equiv; +} + +/* + Check type equivalence in a name list like ||... + Return 0 if not equal, 1 if equal +*/ +SWIGRUNTIME int +SWIG_TypeEquiv(const char *nb, const char *tb) { + return SWIG_TypeCmp(nb, tb) == 0 ? 1 : 0; +} + +/* + Check the typename +*/ +SWIGRUNTIME swig_cast_info * +SWIG_TypeCheck(const char *c, swig_type_info *ty) { + if (ty) { + swig_cast_info *iter = ty->cast; + while (iter) { + if (strcmp(iter->type->name, c) == 0) { + if (iter == ty->cast) + return iter; + /* Move iter to the top of the linked list */ + iter->prev->next = iter->next; + if (iter->next) + iter->next->prev = iter->prev; + iter->next = ty->cast; + iter->prev = 0; + if (ty->cast) ty->cast->prev = iter; + ty->cast = iter; + return iter; + } + iter = iter->next; + } + } + return 0; +} + +/* + Identical to SWIG_TypeCheck, except strcmp is replaced with a pointer comparison +*/ +SWIGRUNTIME swig_cast_info * +SWIG_TypeCheckStruct(swig_type_info *from, swig_type_info *ty) { + if (ty) { + swig_cast_info *iter = ty->cast; + while (iter) { + if (iter->type == from) { + if (iter == ty->cast) + return iter; + /* Move iter to the top of the linked list */ + iter->prev->next = iter->next; + if (iter->next) + iter->next->prev = iter->prev; + iter->next = ty->cast; + iter->prev = 0; + if (ty->cast) ty->cast->prev = iter; + ty->cast = iter; + return iter; + } + iter = iter->next; + } + } + return 0; +} + +/* + Cast a pointer up an inheritance hierarchy +*/ +SWIGRUNTIMEINLINE void * +SWIG_TypeCast(swig_cast_info *ty, void *ptr, int *newmemory) { + return ((!ty) || (!ty->converter)) ? ptr : (*ty->converter)(ptr, newmemory); +} + +/* + Dynamic pointer casting. Down an inheritance hierarchy +*/ +SWIGRUNTIME swig_type_info * +SWIG_TypeDynamicCast(swig_type_info *ty, void **ptr) { + swig_type_info *lastty = ty; + if (!ty || !ty->dcast) return ty; + while (ty && (ty->dcast)) { + ty = (*ty->dcast)(ptr); + if (ty) lastty = ty; + } + return lastty; +} + +/* + Return the name associated with this type +*/ +SWIGRUNTIMEINLINE const char * +SWIG_TypeName(const swig_type_info *ty) { + return ty->name; +} + +/* + Return the pretty name associated with this type, + that is an unmangled type name in a form presentable to the user. +*/ +SWIGRUNTIME const char * +SWIG_TypePrettyName(const swig_type_info *type) { + /* The "str" field contains the equivalent pretty names of the + type, separated by vertical-bar characters. We choose + to print the last name, as it is often (?) the most + specific. */ + if (!type) return NULL; + if (type->str != NULL) { + const char *last_name = type->str; + const char *s; + for (s = type->str; *s; s++) + if (*s == '|') last_name = s+1; + return last_name; + } + else + return type->name; +} + +/* + Set the clientdata field for a type +*/ +SWIGRUNTIME void +SWIG_TypeClientData(swig_type_info *ti, void *clientdata) { + swig_cast_info *cast = ti->cast; + /* if (ti->clientdata == clientdata) return; */ + ti->clientdata = clientdata; + + while (cast) { + if (!cast->converter) { + swig_type_info *tc = cast->type; + if (!tc->clientdata) { + SWIG_TypeClientData(tc, clientdata); + } + } + cast = cast->next; + } +} +SWIGRUNTIME void +SWIG_TypeNewClientData(swig_type_info *ti, void *clientdata) { + SWIG_TypeClientData(ti, clientdata); + ti->owndata = 1; +} + +/* + Search for a swig_type_info structure only by mangled name + Search is a O(log #types) + + We start searching at module start, and finish searching when start == end. + Note: if start == end at the beginning of the function, we go all the way around + the circular list. +*/ +SWIGRUNTIME swig_type_info * +SWIG_MangledTypeQueryModule(swig_module_info *start, + swig_module_info *end, + const char *name) { + swig_module_info *iter = start; + do { + if (iter->size) { + size_t l = 0; + size_t r = iter->size - 1; + do { + /* since l+r >= 0, we can (>> 1) instead (/ 2) */ + size_t i = (l + r) >> 1; + const char *iname = iter->types[i]->name; + if (iname) { + int compare = strcmp(name, iname); + if (compare == 0) { + return iter->types[i]; + } else if (compare < 0) { + if (i) { + r = i - 1; + } else { + break; + } + } else if (compare > 0) { + l = i + 1; + } + } else { + break; /* should never happen */ + } + } while (l <= r); + } + iter = iter->next; + } while (iter != end); + return 0; +} + +/* + Search for a swig_type_info structure for either a mangled name or a human readable name. + It first searches the mangled names of the types, which is a O(log #types) + If a type is not found it then searches the human readable names, which is O(#types). + + We start searching at module start, and finish searching when start == end. + Note: if start == end at the beginning of the function, we go all the way around + the circular list. +*/ +SWIGRUNTIME swig_type_info * +SWIG_TypeQueryModule(swig_module_info *start, + swig_module_info *end, + const char *name) { + /* STEP 1: Search the name field using binary search */ + swig_type_info *ret = SWIG_MangledTypeQueryModule(start, end, name); + if (ret) { + return ret; + } else { + /* STEP 2: If the type hasn't been found, do a complete search + of the str field (the human readable name) */ + swig_module_info *iter = start; + do { + size_t i = 0; + for (; i < iter->size; ++i) { + if (iter->types[i]->str && (SWIG_TypeEquiv(iter->types[i]->str, name))) + return iter->types[i]; + } + iter = iter->next; + } while (iter != end); + } + + /* neither found a match */ + return 0; +} + +/* + Pack binary data into a string +*/ +SWIGRUNTIME char * +SWIG_PackData(char *c, void *ptr, size_t sz) { + static const char hex[17] = "0123456789abcdef"; + const unsigned char *u = (unsigned char *) ptr; + const unsigned char *eu = u + sz; + for (; u != eu; ++u) { + unsigned char uu = *u; + *(c++) = hex[(uu & 0xf0) >> 4]; + *(c++) = hex[uu & 0xf]; + } + return c; +} + +/* + Unpack binary data from a string +*/ +SWIGRUNTIME const char * +SWIG_UnpackData(const char *c, void *ptr, size_t sz) { + unsigned char *u = (unsigned char *) ptr; + const unsigned char *eu = u + sz; + for (; u != eu; ++u) { + char d = *(c++); + unsigned char uu; + if ((d >= '0') && (d <= '9')) + uu = (unsigned char)((d - '0') << 4); + else if ((d >= 'a') && (d <= 'f')) + uu = (unsigned char)((d - ('a'-10)) << 4); + else + return (char *) 0; + d = *(c++); + if ((d >= '0') && (d <= '9')) + uu |= (unsigned char)(d - '0'); + else if ((d >= 'a') && (d <= 'f')) + uu |= (unsigned char)(d - ('a'-10)); + else + return (char *) 0; + *u = uu; + } + return c; +} + +/* + Pack 'void *' into a string buffer. +*/ +SWIGRUNTIME char * +SWIG_PackVoidPtr(char *buff, void *ptr, const char *name, size_t bsz) { + char *r = buff; + if ((2*sizeof(void *) + 2) > bsz) return 0; + *(r++) = '_'; + r = SWIG_PackData(r,&ptr,sizeof(void *)); + if (strlen(name) + 1 > (bsz - (r - buff))) return 0; + strcpy(r,name); + return buff; +} + +SWIGRUNTIME const char * +SWIG_UnpackVoidPtr(const char *c, void **ptr, const char *name) { + if (*c != '_') { + if (strcmp(c,"NULL") == 0) { + *ptr = (void *) 0; + return name; + } else { + return 0; + } + } + return SWIG_UnpackData(++c,ptr,sizeof(void *)); +} + +SWIGRUNTIME char * +SWIG_PackDataName(char *buff, void *ptr, size_t sz, const char *name, size_t bsz) { + char *r = buff; + size_t lname = (name ? strlen(name) : 0); + if ((2*sz + 2 + lname) > bsz) return 0; + *(r++) = '_'; + r = SWIG_PackData(r,ptr,sz); + if (lname) { + strncpy(r,name,lname+1); + } else { + *r = 0; + } + return buff; +} + +SWIGRUNTIME const char * +SWIG_UnpackDataName(const char *c, void *ptr, size_t sz, const char *name) { + if (*c != '_') { + if (strcmp(c,"NULL") == 0) { + memset(ptr,0,sz); + return name; + } else { + return 0; + } + } + return SWIG_UnpackData(++c,ptr,sz); +} + +#ifdef __cplusplus +} +#endif + +/* Errors in SWIG */ +#define SWIG_UnknownError -1 +#define SWIG_IOError -2 +#define SWIG_RuntimeError -3 +#define SWIG_IndexError -4 +#define SWIG_TypeError -5 +#define SWIG_DivisionByZero -6 +#define SWIG_OverflowError -7 +#define SWIG_SyntaxError -8 +#define SWIG_ValueError -9 +#define SWIG_SystemError -10 +#define SWIG_AttributeError -11 +#define SWIG_MemoryError -12 +#define SWIG_NullReferenceError -13 + + + +/* Compatibility macros for Python 3 */ +#if PY_VERSION_HEX >= 0x03000000 + +#define PyClass_Check(obj) PyObject_IsInstance(obj, (PyObject *)&PyType_Type) +#define PyInt_Check(x) PyLong_Check(x) +#define PyInt_AsLong(x) PyLong_AsLong(x) +#define PyInt_FromLong(x) PyLong_FromLong(x) +#define PyInt_FromSize_t(x) PyLong_FromSize_t(x) +#define PyString_Check(name) PyBytes_Check(name) +#define PyString_FromString(x) PyUnicode_FromString(x) +#define PyString_Format(fmt, args) PyUnicode_Format(fmt, args) +#define PyString_AsString(str) PyBytes_AsString(str) +#define PyString_Size(str) PyBytes_Size(str) +#define PyString_InternFromString(key) PyUnicode_InternFromString(key) +#define Py_TPFLAGS_HAVE_CLASS Py_TPFLAGS_BASETYPE +#define PyString_AS_STRING(x) PyUnicode_AS_STRING(x) +#define _PyLong_FromSsize_t(x) PyLong_FromSsize_t(x) + +#endif + +#ifndef Py_TYPE +# define Py_TYPE(op) ((op)->ob_type) +#endif + +/* SWIG APIs for compatibility of both Python 2 & 3 */ + +#if PY_VERSION_HEX >= 0x03000000 +# define SWIG_Python_str_FromFormat PyUnicode_FromFormat +#else +# define SWIG_Python_str_FromFormat PyString_FromFormat +#endif + + +/* Warning: This function will allocate a new string in Python 3, + * so please call SWIG_Python_str_DelForPy3(x) to free the space. + */ +SWIGINTERN char* +SWIG_Python_str_AsChar(PyObject *str) +{ +#if PY_VERSION_HEX >= 0x03000000 + char *cstr; + char *newstr; + Py_ssize_t len; + str = PyUnicode_AsUTF8String(str); + PyBytes_AsStringAndSize(str, &cstr, &len); + newstr = (char *) malloc(len+1); + memcpy(newstr, cstr, len+1); + Py_XDECREF(str); + return newstr; +#else + return PyString_AsString(str); +#endif +} + +#if PY_VERSION_HEX >= 0x03000000 +# define SWIG_Python_str_DelForPy3(x) free( (void*) (x) ) +#else +# define SWIG_Python_str_DelForPy3(x) +#endif + + +SWIGINTERN PyObject* +SWIG_Python_str_FromChar(const char *c) +{ +#if PY_VERSION_HEX >= 0x03000000 + return PyUnicode_FromString(c); +#else + return PyString_FromString(c); +#endif +} + +/* Add PyOS_snprintf for old Pythons */ +#if PY_VERSION_HEX < 0x02020000 +# if defined(_MSC_VER) || defined(__BORLANDC__) || defined(_WATCOM) +# define PyOS_snprintf _snprintf +# else +# define PyOS_snprintf snprintf +# endif +#endif + +/* A crude PyString_FromFormat implementation for old Pythons */ +#if PY_VERSION_HEX < 0x02020000 + +#ifndef SWIG_PYBUFFER_SIZE +# define SWIG_PYBUFFER_SIZE 1024 +#endif + +static PyObject * +PyString_FromFormat(const char *fmt, ...) { + va_list ap; + char buf[SWIG_PYBUFFER_SIZE * 2]; + int res; + va_start(ap, fmt); + res = vsnprintf(buf, sizeof(buf), fmt, ap); + va_end(ap); + return (res < 0 || res >= (int)sizeof(buf)) ? 0 : PyString_FromString(buf); +} +#endif + +#ifndef PyObject_DEL +# define PyObject_DEL PyObject_Del +#endif + +/* A crude PyExc_StopIteration exception for old Pythons */ +#if PY_VERSION_HEX < 0x02020000 +# ifndef PyExc_StopIteration +# define PyExc_StopIteration PyExc_RuntimeError +# endif +# ifndef PyObject_GenericGetAttr +# define PyObject_GenericGetAttr 0 +# endif +#endif + +/* Py_NotImplemented is defined in 2.1 and up. */ +#if PY_VERSION_HEX < 0x02010000 +# ifndef Py_NotImplemented +# define Py_NotImplemented PyExc_RuntimeError +# endif +#endif + +/* A crude PyString_AsStringAndSize implementation for old Pythons */ +#if PY_VERSION_HEX < 0x02010000 +# ifndef PyString_AsStringAndSize +# define PyString_AsStringAndSize(obj, s, len) {*s = PyString_AsString(obj); *len = *s ? strlen(*s) : 0;} +# endif +#endif + +/* PySequence_Size for old Pythons */ +#if PY_VERSION_HEX < 0x02000000 +# ifndef PySequence_Size +# define PySequence_Size PySequence_Length +# endif +#endif + +/* PyBool_FromLong for old Pythons */ +#if PY_VERSION_HEX < 0x02030000 +static +PyObject *PyBool_FromLong(long ok) +{ + PyObject *result = ok ? Py_True : Py_False; + Py_INCREF(result); + return result; +} +#endif + +/* Py_ssize_t for old Pythons */ +/* This code is as recommended by: */ +/* http://www.python.org/dev/peps/pep-0353/#conversion-guidelines */ +#if PY_VERSION_HEX < 0x02050000 && !defined(PY_SSIZE_T_MIN) +typedef int Py_ssize_t; +# define PY_SSIZE_T_MAX INT_MAX +# define PY_SSIZE_T_MIN INT_MIN +typedef inquiry lenfunc; +typedef intargfunc ssizeargfunc; +typedef intintargfunc ssizessizeargfunc; +typedef intobjargproc ssizeobjargproc; +typedef intintobjargproc ssizessizeobjargproc; +typedef getreadbufferproc readbufferproc; +typedef getwritebufferproc writebufferproc; +typedef getsegcountproc segcountproc; +typedef getcharbufferproc charbufferproc; +static long PyNumber_AsSsize_t (PyObject *x, void *SWIGUNUSEDPARM(exc)) +{ + long result = 0; + PyObject *i = PyNumber_Int(x); + if (i) { + result = PyInt_AsLong(i); + Py_DECREF(i); + } + return result; +} +#endif + +#if PY_VERSION_HEX < 0x02050000 +#define PyInt_FromSize_t(x) PyInt_FromLong((long)x) +#endif + +#if PY_VERSION_HEX < 0x02040000 +#define Py_VISIT(op) \ + do { \ + if (op) { \ + int vret = visit((op), arg); \ + if (vret) \ + return vret; \ + } \ + } while (0) +#endif + +#if PY_VERSION_HEX < 0x02030000 +typedef struct { + PyTypeObject type; + PyNumberMethods as_number; + PyMappingMethods as_mapping; + PySequenceMethods as_sequence; + PyBufferProcs as_buffer; + PyObject *name, *slots; +} PyHeapTypeObject; +#endif + +#if PY_VERSION_HEX < 0x02030000 +typedef destructor freefunc; +#endif + +#if ((PY_MAJOR_VERSION == 2 && PY_MINOR_VERSION > 6) || \ + (PY_MAJOR_VERSION == 3 && PY_MINOR_VERSION > 0) || \ + (PY_MAJOR_VERSION > 3)) +# define SWIGPY_USE_CAPSULE +# define SWIGPY_CAPSULE_NAME ((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION ".type_pointer_capsule" SWIG_TYPE_TABLE_NAME) +#endif + +#if PY_VERSION_HEX < 0x03020000 +#define PyDescr_TYPE(x) (((PyDescrObject *)(x))->d_type) +#define PyDescr_NAME(x) (((PyDescrObject *)(x))->d_name) +#define Py_hash_t long +#endif + +/* ----------------------------------------------------------------------------- + * error manipulation + * ----------------------------------------------------------------------------- */ + +SWIGRUNTIME PyObject* +SWIG_Python_ErrorType(int code) { + PyObject* type = 0; + switch(code) { + case SWIG_MemoryError: + type = PyExc_MemoryError; + break; + case SWIG_IOError: + type = PyExc_IOError; + break; + case SWIG_RuntimeError: + type = PyExc_RuntimeError; + break; + case SWIG_IndexError: + type = PyExc_IndexError; + break; + case SWIG_TypeError: + type = PyExc_TypeError; + break; + case SWIG_DivisionByZero: + type = PyExc_ZeroDivisionError; + break; + case SWIG_OverflowError: + type = PyExc_OverflowError; + break; + case SWIG_SyntaxError: + type = PyExc_SyntaxError; + break; + case SWIG_ValueError: + type = PyExc_ValueError; + break; + case SWIG_SystemError: + type = PyExc_SystemError; + break; + case SWIG_AttributeError: + type = PyExc_AttributeError; + break; + default: + type = PyExc_RuntimeError; + } + return type; +} + + +SWIGRUNTIME void +SWIG_Python_AddErrorMsg(const char* mesg) +{ + PyObject *type = 0; + PyObject *value = 0; + PyObject *traceback = 0; + + if (PyErr_Occurred()) PyErr_Fetch(&type, &value, &traceback); + if (value) { + char *tmp; + PyObject *old_str = PyObject_Str(value); + PyErr_Clear(); + Py_XINCREF(type); + + PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg); + SWIG_Python_str_DelForPy3(tmp); + Py_DECREF(old_str); + Py_DECREF(value); + } else { + PyErr_SetString(PyExc_RuntimeError, mesg); + } +} + +#if defined(SWIG_PYTHON_NO_THREADS) +# if defined(SWIG_PYTHON_THREADS) +# undef SWIG_PYTHON_THREADS +# endif +#endif +#if defined(SWIG_PYTHON_THREADS) /* Threading support is enabled */ +# if !defined(SWIG_PYTHON_USE_GIL) && !defined(SWIG_PYTHON_NO_USE_GIL) +# if (PY_VERSION_HEX >= 0x02030000) /* For 2.3 or later, use the PyGILState calls */ +# define SWIG_PYTHON_USE_GIL +# endif +# endif +# if defined(SWIG_PYTHON_USE_GIL) /* Use PyGILState threads calls */ +# ifndef SWIG_PYTHON_INITIALIZE_THREADS +# define SWIG_PYTHON_INITIALIZE_THREADS PyEval_InitThreads() +# endif +# ifdef __cplusplus /* C++ code */ + class SWIG_Python_Thread_Block { + bool status; + PyGILState_STATE state; + public: + void end() { if (status) { PyGILState_Release(state); status = false;} } + SWIG_Python_Thread_Block() : status(true), state(PyGILState_Ensure()) {} + ~SWIG_Python_Thread_Block() { end(); } + }; + class SWIG_Python_Thread_Allow { + bool status; + PyThreadState *save; + public: + void end() { if (status) { PyEval_RestoreThread(save); status = false; }} + SWIG_Python_Thread_Allow() : status(true), save(PyEval_SaveThread()) {} + ~SWIG_Python_Thread_Allow() { end(); } + }; +# define SWIG_PYTHON_THREAD_BEGIN_BLOCK SWIG_Python_Thread_Block _swig_thread_block +# define SWIG_PYTHON_THREAD_END_BLOCK _swig_thread_block.end() +# define SWIG_PYTHON_THREAD_BEGIN_ALLOW SWIG_Python_Thread_Allow _swig_thread_allow +# define SWIG_PYTHON_THREAD_END_ALLOW _swig_thread_allow.end() +# else /* C code */ +# define SWIG_PYTHON_THREAD_BEGIN_BLOCK PyGILState_STATE _swig_thread_block = PyGILState_Ensure() +# define SWIG_PYTHON_THREAD_END_BLOCK PyGILState_Release(_swig_thread_block) +# define SWIG_PYTHON_THREAD_BEGIN_ALLOW PyThreadState *_swig_thread_allow = PyEval_SaveThread() +# define SWIG_PYTHON_THREAD_END_ALLOW PyEval_RestoreThread(_swig_thread_allow) +# endif +# else /* Old thread way, not implemented, user must provide it */ +# if !defined(SWIG_PYTHON_INITIALIZE_THREADS) +# define SWIG_PYTHON_INITIALIZE_THREADS +# endif +# if !defined(SWIG_PYTHON_THREAD_BEGIN_BLOCK) +# define SWIG_PYTHON_THREAD_BEGIN_BLOCK +# endif +# if !defined(SWIG_PYTHON_THREAD_END_BLOCK) +# define SWIG_PYTHON_THREAD_END_BLOCK +# endif +# if !defined(SWIG_PYTHON_THREAD_BEGIN_ALLOW) +# define SWIG_PYTHON_THREAD_BEGIN_ALLOW +# endif +# if !defined(SWIG_PYTHON_THREAD_END_ALLOW) +# define SWIG_PYTHON_THREAD_END_ALLOW +# endif +# endif +#else /* No thread support */ +# define SWIG_PYTHON_INITIALIZE_THREADS +# define SWIG_PYTHON_THREAD_BEGIN_BLOCK +# define SWIG_PYTHON_THREAD_END_BLOCK +# define SWIG_PYTHON_THREAD_BEGIN_ALLOW +# define SWIG_PYTHON_THREAD_END_ALLOW +#endif + +/* ----------------------------------------------------------------------------- + * Python API portion that goes into the runtime + * ----------------------------------------------------------------------------- */ + +#ifdef __cplusplus +extern "C" { +#endif + +/* ----------------------------------------------------------------------------- + * Constant declarations + * ----------------------------------------------------------------------------- */ + +/* Constant Types */ +#define SWIG_PY_POINTER 4 +#define SWIG_PY_BINARY 5 + +/* Constant information structure */ +typedef struct swig_const_info { + int type; + char *name; + long lvalue; + double dvalue; + void *pvalue; + swig_type_info **ptype; +} swig_const_info; + + +/* ----------------------------------------------------------------------------- + * Wrapper of PyInstanceMethod_New() used in Python 3 + * It is exported to the generated module, used for -fastproxy + * ----------------------------------------------------------------------------- */ +#if PY_VERSION_HEX >= 0x03000000 +SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *func) +{ + return PyInstanceMethod_New(func); +} +#else +SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *SWIGUNUSEDPARM(func)) +{ + return NULL; +} +#endif + +#ifdef __cplusplus +} +#endif + + +/* ----------------------------------------------------------------------------- + * pyrun.swg + * + * This file contains the runtime support for Python modules + * and includes code for managing global variables and pointer + * type checking. + * + * ----------------------------------------------------------------------------- */ + +/* Common SWIG API */ + +/* for raw pointers */ +#define SWIG_Python_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, 0) +#define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtr(obj, pptr, type, flags) +#define SWIG_ConvertPtrAndOwn(obj,pptr,type,flags,own) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, own) + +#ifdef SWIGPYTHON_BUILTIN +#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(self, ptr, type, flags) +#else +#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) +#endif + +#define SWIG_InternalNewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) + +#define SWIG_CheckImplicit(ty) SWIG_Python_CheckImplicit(ty) +#define SWIG_AcquirePtr(ptr, src) SWIG_Python_AcquirePtr(ptr, src) +#define swig_owntype int + +/* for raw packed data */ +#define SWIG_ConvertPacked(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty) +#define SWIG_NewPackedObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type) + +/* for class or struct pointers */ +#define SWIG_ConvertInstance(obj, pptr, type, flags) SWIG_ConvertPtr(obj, pptr, type, flags) +#define SWIG_NewInstanceObj(ptr, type, flags) SWIG_NewPointerObj(ptr, type, flags) + +/* for C or C++ function pointers */ +#define SWIG_ConvertFunctionPtr(obj, pptr, type) SWIG_Python_ConvertFunctionPtr(obj, pptr, type) +#define SWIG_NewFunctionPtrObj(ptr, type) SWIG_Python_NewPointerObj(NULL, ptr, type, 0) + +/* for C++ member pointers, ie, member methods */ +#define SWIG_ConvertMember(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty) +#define SWIG_NewMemberObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type) + + +/* Runtime API */ + +#define SWIG_GetModule(clientdata) SWIG_Python_GetModule(clientdata) +#define SWIG_SetModule(clientdata, pointer) SWIG_Python_SetModule(pointer) +#define SWIG_NewClientData(obj) SwigPyClientData_New(obj) + +#define SWIG_SetErrorObj SWIG_Python_SetErrorObj +#define SWIG_SetErrorMsg SWIG_Python_SetErrorMsg +#define SWIG_ErrorType(code) SWIG_Python_ErrorType(code) +#define SWIG_Error(code, msg) SWIG_Python_SetErrorMsg(SWIG_ErrorType(code), msg) +#define SWIG_fail goto fail + + +/* Runtime API implementation */ + +/* Error manipulation */ + +SWIGINTERN void +SWIG_Python_SetErrorObj(PyObject *errtype, PyObject *obj) { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + PyErr_SetObject(errtype, obj); + Py_DECREF(obj); + SWIG_PYTHON_THREAD_END_BLOCK; +} + +SWIGINTERN void +SWIG_Python_SetErrorMsg(PyObject *errtype, const char *msg) { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + PyErr_SetString(errtype, msg); + SWIG_PYTHON_THREAD_END_BLOCK; +} + +#define SWIG_Python_Raise(obj, type, desc) SWIG_Python_SetErrorObj(SWIG_Python_ExceptionType(desc), obj) + +/* Set a constant value */ + +#if defined(SWIGPYTHON_BUILTIN) + +SWIGINTERN void +SwigPyBuiltin_AddPublicSymbol(PyObject *seq, const char *key) { + PyObject *s = PyString_InternFromString(key); + PyList_Append(seq, s); + Py_DECREF(s); +} + +SWIGINTERN void +SWIG_Python_SetConstant(PyObject *d, PyObject *public_interface, const char *name, PyObject *obj) { +#if PY_VERSION_HEX < 0x02030000 + PyDict_SetItemString(d, (char *)name, obj); +#else + PyDict_SetItemString(d, name, obj); +#endif + Py_DECREF(obj); + if (public_interface) + SwigPyBuiltin_AddPublicSymbol(public_interface, name); +} + +#else + +SWIGINTERN void +SWIG_Python_SetConstant(PyObject *d, const char *name, PyObject *obj) { +#if PY_VERSION_HEX < 0x02030000 + PyDict_SetItemString(d, (char *)name, obj); +#else + PyDict_SetItemString(d, name, obj); +#endif + Py_DECREF(obj); +} + +#endif + +/* Append a value to the result obj */ + +SWIGINTERN PyObject* +SWIG_Python_AppendOutput(PyObject* result, PyObject* obj) { +#if !defined(SWIG_PYTHON_OUTPUT_TUPLE) + if (!result) { + result = obj; + } else if (result == Py_None) { + Py_DECREF(result); + result = obj; + } else { + if (!PyList_Check(result)) { + PyObject *o2 = result; + result = PyList_New(1); + PyList_SetItem(result, 0, o2); + } + PyList_Append(result,obj); + Py_DECREF(obj); + } + return result; +#else + PyObject* o2; + PyObject* o3; + if (!result) { + result = obj; + } else if (result == Py_None) { + Py_DECREF(result); + result = obj; + } else { + if (!PyTuple_Check(result)) { + o2 = result; + result = PyTuple_New(1); + PyTuple_SET_ITEM(result, 0, o2); + } + o3 = PyTuple_New(1); + PyTuple_SET_ITEM(o3, 0, obj); + o2 = result; + result = PySequence_Concat(o2, o3); + Py_DECREF(o2); + Py_DECREF(o3); + } + return result; +#endif +} + +/* Unpack the argument tuple */ + +SWIGINTERN Py_ssize_t +SWIG_Python_UnpackTuple(PyObject *args, const char *name, Py_ssize_t min, Py_ssize_t max, PyObject **objs) +{ + if (!args) { + if (!min && !max) { + return 1; + } else { + PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got none", + name, (min == max ? "" : "at least "), (int)min); + return 0; + } + } + if (!PyTuple_Check(args)) { + if (min <= 1 && max >= 1) { + Py_ssize_t i; + objs[0] = args; + for (i = 1; i < max; ++i) { + objs[i] = 0; + } + return 2; + } + PyErr_SetString(PyExc_SystemError, "UnpackTuple() argument list is not a tuple"); + return 0; + } else { + Py_ssize_t l = PyTuple_GET_SIZE(args); + if (l < min) { + PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d", + name, (min == max ? "" : "at least "), (int)min, (int)l); + return 0; + } else if (l > max) { + PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d", + name, (min == max ? "" : "at most "), (int)max, (int)l); + return 0; + } else { + Py_ssize_t i; + for (i = 0; i < l; ++i) { + objs[i] = PyTuple_GET_ITEM(args, i); + } + for (; l < max; ++l) { + objs[l] = 0; + } + return i + 1; + } + } +} + +/* A functor is a function object with one single object argument */ +#if PY_VERSION_HEX >= 0x02020000 +#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunctionObjArgs(functor, obj, NULL); +#else +#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunction(functor, "O", obj); +#endif + +/* + Helper for static pointer initialization for both C and C++ code, for example + static PyObject *SWIG_STATIC_POINTER(MyVar) = NewSomething(...); +*/ +#ifdef __cplusplus +#define SWIG_STATIC_POINTER(var) var +#else +#define SWIG_STATIC_POINTER(var) var = 0; if (!var) var +#endif + +/* ----------------------------------------------------------------------------- + * Pointer declarations + * ----------------------------------------------------------------------------- */ + +/* Flags for new pointer objects */ +#define SWIG_POINTER_NOSHADOW (SWIG_POINTER_OWN << 1) +#define SWIG_POINTER_NEW (SWIG_POINTER_NOSHADOW | SWIG_POINTER_OWN) + +#define SWIG_POINTER_IMPLICIT_CONV (SWIG_POINTER_DISOWN << 1) + +#define SWIG_BUILTIN_TP_INIT (SWIG_POINTER_OWN << 2) +#define SWIG_BUILTIN_INIT (SWIG_BUILTIN_TP_INIT | SWIG_POINTER_OWN) + +#ifdef __cplusplus +extern "C" { +#endif + +/* How to access Py_None */ +#if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__) +# ifndef SWIG_PYTHON_NO_BUILD_NONE +# ifndef SWIG_PYTHON_BUILD_NONE +# define SWIG_PYTHON_BUILD_NONE +# endif +# endif +#endif + +#ifdef SWIG_PYTHON_BUILD_NONE +# ifdef Py_None +# undef Py_None +# define Py_None SWIG_Py_None() +# endif +SWIGRUNTIMEINLINE PyObject * +_SWIG_Py_None(void) +{ + PyObject *none = Py_BuildValue((char*)""); + Py_DECREF(none); + return none; +} +SWIGRUNTIME PyObject * +SWIG_Py_None(void) +{ + static PyObject *SWIG_STATIC_POINTER(none) = _SWIG_Py_None(); + return none; +} +#endif + +/* The python void return value */ + +SWIGRUNTIMEINLINE PyObject * +SWIG_Py_Void(void) +{ + PyObject *none = Py_None; + Py_INCREF(none); + return none; +} + +/* SwigPyClientData */ + +typedef struct { + PyObject *klass; + PyObject *newraw; + PyObject *newargs; + PyObject *destroy; + int delargs; + int implicitconv; + PyTypeObject *pytype; +} SwigPyClientData; + +SWIGRUNTIMEINLINE int +SWIG_Python_CheckImplicit(swig_type_info *ty) +{ + SwigPyClientData *data = (SwigPyClientData *)ty->clientdata; + return data ? data->implicitconv : 0; +} + +SWIGRUNTIMEINLINE PyObject * +SWIG_Python_ExceptionType(swig_type_info *desc) { + SwigPyClientData *data = desc ? (SwigPyClientData *) desc->clientdata : 0; + PyObject *klass = data ? data->klass : 0; + return (klass ? klass : PyExc_RuntimeError); +} + + +SWIGRUNTIME SwigPyClientData * +SwigPyClientData_New(PyObject* obj) +{ + if (!obj) { + return 0; + } else { + SwigPyClientData *data = (SwigPyClientData *)malloc(sizeof(SwigPyClientData)); + /* the klass element */ + data->klass = obj; + Py_INCREF(data->klass); + /* the newraw method and newargs arguments used to create a new raw instance */ + if (PyClass_Check(obj)) { + data->newraw = 0; + data->newargs = obj; + Py_INCREF(obj); + } else { +#if (PY_VERSION_HEX < 0x02020000) + data->newraw = 0; +#else + data->newraw = PyObject_GetAttrString(data->klass, (char *)"__new__"); +#endif + if (data->newraw) { + Py_INCREF(data->newraw); + data->newargs = PyTuple_New(1); + PyTuple_SetItem(data->newargs, 0, obj); + } else { + data->newargs = obj; + } + Py_INCREF(data->newargs); + } + /* the destroy method, aka as the C++ delete method */ + data->destroy = PyObject_GetAttrString(data->klass, (char *)"__swig_destroy__"); + if (PyErr_Occurred()) { + PyErr_Clear(); + data->destroy = 0; + } + if (data->destroy) { + int flags; + Py_INCREF(data->destroy); + flags = PyCFunction_GET_FLAGS(data->destroy); +#ifdef METH_O + data->delargs = !(flags & (METH_O)); +#else + data->delargs = 0; +#endif + } else { + data->delargs = 0; + } + data->implicitconv = 0; + data->pytype = 0; + return data; + } +} + +SWIGRUNTIME void +SwigPyClientData_Del(SwigPyClientData *data) { + Py_XDECREF(data->newraw); + Py_XDECREF(data->newargs); + Py_XDECREF(data->destroy); +} + +/* =============== SwigPyObject =====================*/ + +typedef struct { + PyObject_HEAD + void *ptr; + swig_type_info *ty; + int own; + PyObject *next; +#ifdef SWIGPYTHON_BUILTIN + PyObject *dict; +#endif +} SwigPyObject; + + +#ifdef SWIGPYTHON_BUILTIN + +SWIGRUNTIME PyObject * +SwigPyObject_get___dict__(PyObject *v, PyObject *SWIGUNUSEDPARM(args)) +{ + SwigPyObject *sobj = (SwigPyObject *)v; + + if (!sobj->dict) + sobj->dict = PyDict_New(); + + Py_INCREF(sobj->dict); + return sobj->dict; +} + +#endif + +SWIGRUNTIME PyObject * +SwigPyObject_long(SwigPyObject *v) +{ + return PyLong_FromVoidPtr(v->ptr); +} + +SWIGRUNTIME PyObject * +SwigPyObject_format(const char* fmt, SwigPyObject *v) +{ + PyObject *res = NULL; + PyObject *args = PyTuple_New(1); + if (args) { + if (PyTuple_SetItem(args, 0, SwigPyObject_long(v)) == 0) { + PyObject *ofmt = SWIG_Python_str_FromChar(fmt); + if (ofmt) { +#if PY_VERSION_HEX >= 0x03000000 + res = PyUnicode_Format(ofmt,args); +#else + res = PyString_Format(ofmt,args); +#endif + Py_DECREF(ofmt); + } + Py_DECREF(args); + } + } + return res; +} + +SWIGRUNTIME PyObject * +SwigPyObject_oct(SwigPyObject *v) +{ + return SwigPyObject_format("%o",v); +} + +SWIGRUNTIME PyObject * +SwigPyObject_hex(SwigPyObject *v) +{ + return SwigPyObject_format("%x",v); +} + +SWIGRUNTIME PyObject * +#ifdef METH_NOARGS +SwigPyObject_repr(SwigPyObject *v) +#else +SwigPyObject_repr(SwigPyObject *v, PyObject *args) +#endif +{ + const char *name = SWIG_TypePrettyName(v->ty); + PyObject *repr = SWIG_Python_str_FromFormat("", (name ? name : "unknown"), (void *)v); + if (v->next) { +# ifdef METH_NOARGS + PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next); +# else + PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next, args); +# endif +# if PY_VERSION_HEX >= 0x03000000 + PyObject *joined = PyUnicode_Concat(repr, nrep); + Py_DecRef(repr); + Py_DecRef(nrep); + repr = joined; +# else + PyString_ConcatAndDel(&repr,nrep); +# endif + } + return repr; +} + +SWIGRUNTIME int +SwigPyObject_compare(SwigPyObject *v, SwigPyObject *w) +{ + void *i = v->ptr; + void *j = w->ptr; + return (i < j) ? -1 : ((i > j) ? 1 : 0); +} + +/* Added for Python 3.x, would it also be useful for Python 2.x? */ +SWIGRUNTIME PyObject* +SwigPyObject_richcompare(SwigPyObject *v, SwigPyObject *w, int op) +{ + PyObject* res; + if( op != Py_EQ && op != Py_NE ) { + Py_INCREF(Py_NotImplemented); + return Py_NotImplemented; + } + res = PyBool_FromLong( (SwigPyObject_compare(v, w)==0) == (op == Py_EQ) ? 1 : 0); + return res; +} + + +SWIGRUNTIME PyTypeObject* SwigPyObject_TypeOnce(void); + +#ifdef SWIGPYTHON_BUILTIN +static swig_type_info *SwigPyObject_stype = 0; +SWIGRUNTIME PyTypeObject* +SwigPyObject_type(void) { + SwigPyClientData *cd; + assert(SwigPyObject_stype); + cd = (SwigPyClientData*) SwigPyObject_stype->clientdata; + assert(cd); + assert(cd->pytype); + return cd->pytype; +} +#else +SWIGRUNTIME PyTypeObject* +SwigPyObject_type(void) { + static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyObject_TypeOnce(); + return type; +} +#endif + +SWIGRUNTIMEINLINE int +SwigPyObject_Check(PyObject *op) { +#ifdef SWIGPYTHON_BUILTIN + PyTypeObject *target_tp = SwigPyObject_type(); + if (PyType_IsSubtype(op->ob_type, target_tp)) + return 1; + return (strcmp(op->ob_type->tp_name, "SwigPyObject") == 0); +#else + return (Py_TYPE(op) == SwigPyObject_type()) + || (strcmp(Py_TYPE(op)->tp_name,"SwigPyObject") == 0); +#endif +} + +SWIGRUNTIME PyObject * +SwigPyObject_New(void *ptr, swig_type_info *ty, int own); + +SWIGRUNTIME void +SwigPyObject_dealloc(PyObject *v) +{ + SwigPyObject *sobj = (SwigPyObject *) v; + PyObject *next = sobj->next; + if (sobj->own == SWIG_POINTER_OWN) { + swig_type_info *ty = sobj->ty; + SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0; + PyObject *destroy = data ? data->destroy : 0; + if (destroy) { + /* destroy is always a VARARGS method */ + PyObject *res; + + /* PyObject_CallFunction() has the potential to silently drop + the active active exception. In cases of unnamed temporary + variable or where we just finished iterating over a generator + StopIteration will be active right now, and this needs to + remain true upon return from SwigPyObject_dealloc. So save + and restore. */ + + PyObject *val = NULL, *type = NULL, *tb = NULL; + PyErr_Fetch(&val, &type, &tb); + + if (data->delargs) { + /* we need to create a temporary object to carry the destroy operation */ + PyObject *tmp = SwigPyObject_New(sobj->ptr, ty, 0); + res = SWIG_Python_CallFunctor(destroy, tmp); + Py_DECREF(tmp); + } else { + PyCFunction meth = PyCFunction_GET_FUNCTION(destroy); + PyObject *mself = PyCFunction_GET_SELF(destroy); + res = ((*meth)(mself, v)); + } + if (!res) + PyErr_WriteUnraisable(destroy); + + PyErr_Restore(val, type, tb); + + Py_XDECREF(res); + } +#if !defined(SWIG_PYTHON_SILENT_MEMLEAK) + else { + const char *name = SWIG_TypePrettyName(ty); + printf("swig/python detected a memory leak of type '%s', no destructor found.\n", (name ? name : "unknown")); + } +#endif + } + Py_XDECREF(next); + PyObject_DEL(v); +} + +SWIGRUNTIME PyObject* +SwigPyObject_append(PyObject* v, PyObject* next) +{ + SwigPyObject *sobj = (SwigPyObject *) v; +#ifndef METH_O + PyObject *tmp = 0; + if (!PyArg_ParseTuple(next,(char *)"O:append", &tmp)) return NULL; + next = tmp; +#endif + if (!SwigPyObject_Check(next)) { + PyErr_SetString(PyExc_TypeError, "Attempt to append a non SwigPyObject"); + return NULL; + } + sobj->next = next; + Py_INCREF(next); + return SWIG_Py_Void(); +} + +SWIGRUNTIME PyObject* +#ifdef METH_NOARGS +SwigPyObject_next(PyObject* v) +#else +SwigPyObject_next(PyObject* v, PyObject *SWIGUNUSEDPARM(args)) +#endif +{ + SwigPyObject *sobj = (SwigPyObject *) v; + if (sobj->next) { + Py_INCREF(sobj->next); + return sobj->next; + } else { + return SWIG_Py_Void(); + } +} + +SWIGINTERN PyObject* +#ifdef METH_NOARGS +SwigPyObject_disown(PyObject *v) +#else +SwigPyObject_disown(PyObject* v, PyObject *SWIGUNUSEDPARM(args)) +#endif +{ + SwigPyObject *sobj = (SwigPyObject *)v; + sobj->own = 0; + return SWIG_Py_Void(); +} + +SWIGINTERN PyObject* +#ifdef METH_NOARGS +SwigPyObject_acquire(PyObject *v) +#else +SwigPyObject_acquire(PyObject* v, PyObject *SWIGUNUSEDPARM(args)) +#endif +{ + SwigPyObject *sobj = (SwigPyObject *)v; + sobj->own = SWIG_POINTER_OWN; + return SWIG_Py_Void(); +} + +SWIGINTERN PyObject* +SwigPyObject_own(PyObject *v, PyObject *args) +{ + PyObject *val = 0; +#if (PY_VERSION_HEX < 0x02020000) + if (!PyArg_ParseTuple(args,(char *)"|O:own",&val)) +#elif (PY_VERSION_HEX < 0x02050000) + if (!PyArg_UnpackTuple(args, (char *)"own", 0, 1, &val)) +#else + if (!PyArg_UnpackTuple(args, "own", 0, 1, &val)) +#endif + { + return NULL; + } + else + { + SwigPyObject *sobj = (SwigPyObject *)v; + PyObject *obj = PyBool_FromLong(sobj->own); + if (val) { +#ifdef METH_NOARGS + if (PyObject_IsTrue(val)) { + SwigPyObject_acquire(v); + } else { + SwigPyObject_disown(v); + } +#else + if (PyObject_IsTrue(val)) { + SwigPyObject_acquire(v,args); + } else { + SwigPyObject_disown(v,args); + } +#endif + } + return obj; + } +} + +#ifdef METH_O +static PyMethodDef +swigobject_methods[] = { + {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_NOARGS, (char *)"releases ownership of the pointer"}, + {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_NOARGS, (char *)"acquires ownership of the pointer"}, + {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"}, + {(char *)"append", (PyCFunction)SwigPyObject_append, METH_O, (char *)"appends another 'this' object"}, + {(char *)"next", (PyCFunction)SwigPyObject_next, METH_NOARGS, (char *)"returns the next 'this' object"}, + {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_NOARGS, (char *)"returns object representation"}, + {0, 0, 0, 0} +}; +#else +static PyMethodDef +swigobject_methods[] = { + {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_VARARGS, (char *)"releases ownership of the pointer"}, + {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_VARARGS, (char *)"acquires ownership of the pointer"}, + {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"}, + {(char *)"append", (PyCFunction)SwigPyObject_append, METH_VARARGS, (char *)"appends another 'this' object"}, + {(char *)"next", (PyCFunction)SwigPyObject_next, METH_VARARGS, (char *)"returns the next 'this' object"}, + {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_VARARGS, (char *)"returns object representation"}, + {0, 0, 0, 0} +}; +#endif + +#if PY_VERSION_HEX < 0x02020000 +SWIGINTERN PyObject * +SwigPyObject_getattr(SwigPyObject *sobj,char *name) +{ + return Py_FindMethod(swigobject_methods, (PyObject *)sobj, name); +} +#endif + +SWIGRUNTIME PyTypeObject* +SwigPyObject_TypeOnce(void) { + static char swigobject_doc[] = "Swig object carries a C/C++ instance pointer"; + + static PyNumberMethods SwigPyObject_as_number = { + (binaryfunc)0, /*nb_add*/ + (binaryfunc)0, /*nb_subtract*/ + (binaryfunc)0, /*nb_multiply*/ + /* nb_divide removed in Python 3 */ +#if PY_VERSION_HEX < 0x03000000 + (binaryfunc)0, /*nb_divide*/ +#endif + (binaryfunc)0, /*nb_remainder*/ + (binaryfunc)0, /*nb_divmod*/ + (ternaryfunc)0,/*nb_power*/ + (unaryfunc)0, /*nb_negative*/ + (unaryfunc)0, /*nb_positive*/ + (unaryfunc)0, /*nb_absolute*/ + (inquiry)0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ +#if PY_VERSION_HEX < 0x03000000 + 0, /*nb_coerce*/ +#endif + (unaryfunc)SwigPyObject_long, /*nb_int*/ +#if PY_VERSION_HEX < 0x03000000 + (unaryfunc)SwigPyObject_long, /*nb_long*/ +#else + 0, /*nb_reserved*/ +#endif + (unaryfunc)0, /*nb_float*/ +#if PY_VERSION_HEX < 0x03000000 + (unaryfunc)SwigPyObject_oct, /*nb_oct*/ + (unaryfunc)SwigPyObject_hex, /*nb_hex*/ +#endif +#if PY_VERSION_HEX >= 0x03050000 /* 3.5 */ + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_matrix_multiply */ +#elif PY_VERSION_HEX >= 0x03000000 /* 3.0 */ + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index, nb_inplace_divide removed */ +#elif PY_VERSION_HEX >= 0x02050000 /* 2.5.0 */ + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index */ +#elif PY_VERSION_HEX >= 0x02020000 /* 2.2.0 */ + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_true_divide */ +#elif PY_VERSION_HEX >= 0x02000000 /* 2.0.0 */ + 0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_or */ +#endif + }; + + static PyTypeObject swigpyobject_type; + static int type_init = 0; + if (!type_init) { + const PyTypeObject tmp = { +#if PY_VERSION_HEX >= 0x03000000 + PyVarObject_HEAD_INIT(NULL, 0) +#else + PyObject_HEAD_INIT(NULL) + 0, /* ob_size */ +#endif + (char *)"SwigPyObject", /* tp_name */ + sizeof(SwigPyObject), /* tp_basicsize */ + 0, /* tp_itemsize */ + (destructor)SwigPyObject_dealloc, /* tp_dealloc */ + 0, /* tp_print */ +#if PY_VERSION_HEX < 0x02020000 + (getattrfunc)SwigPyObject_getattr, /* tp_getattr */ +#else + (getattrfunc)0, /* tp_getattr */ +#endif + (setattrfunc)0, /* tp_setattr */ +#if PY_VERSION_HEX >= 0x03000000 + 0, /* tp_reserved in 3.0.1, tp_compare in 3.0.0 but not used */ +#else + (cmpfunc)SwigPyObject_compare, /* tp_compare */ +#endif + (reprfunc)SwigPyObject_repr, /* tp_repr */ + &SwigPyObject_as_number, /* tp_as_number */ + 0, /* tp_as_sequence */ + 0, /* tp_as_mapping */ + (hashfunc)0, /* tp_hash */ + (ternaryfunc)0, /* tp_call */ + 0, /* tp_str */ + PyObject_GenericGetAttr, /* tp_getattro */ + 0, /* tp_setattro */ + 0, /* tp_as_buffer */ + Py_TPFLAGS_DEFAULT, /* tp_flags */ + swigobject_doc, /* tp_doc */ + 0, /* tp_traverse */ + 0, /* tp_clear */ + (richcmpfunc)SwigPyObject_richcompare,/* tp_richcompare */ + 0, /* tp_weaklistoffset */ +#if PY_VERSION_HEX >= 0x02020000 + 0, /* tp_iter */ + 0, /* tp_iternext */ + swigobject_methods, /* tp_methods */ + 0, /* tp_members */ + 0, /* tp_getset */ + 0, /* tp_base */ + 0, /* tp_dict */ + 0, /* tp_descr_get */ + 0, /* tp_descr_set */ + 0, /* tp_dictoffset */ + 0, /* tp_init */ + 0, /* tp_alloc */ + 0, /* tp_new */ + 0, /* tp_free */ + 0, /* tp_is_gc */ + 0, /* tp_bases */ + 0, /* tp_mro */ + 0, /* tp_cache */ + 0, /* tp_subclasses */ + 0, /* tp_weaklist */ +#endif +#if PY_VERSION_HEX >= 0x02030000 + 0, /* tp_del */ +#endif +#if PY_VERSION_HEX >= 0x02060000 + 0, /* tp_version_tag */ +#endif +#if PY_VERSION_HEX >= 0x03040000 + 0, /* tp_finalize */ +#endif +#ifdef COUNT_ALLOCS + 0, /* tp_allocs */ + 0, /* tp_frees */ + 0, /* tp_maxalloc */ +#if PY_VERSION_HEX >= 0x02050000 + 0, /* tp_prev */ +#endif + 0 /* tp_next */ +#endif + }; + swigpyobject_type = tmp; + type_init = 1; +#if PY_VERSION_HEX < 0x02020000 + swigpyobject_type.ob_type = &PyType_Type; +#else + if (PyType_Ready(&swigpyobject_type) < 0) + return NULL; +#endif + } + return &swigpyobject_type; +} + +SWIGRUNTIME PyObject * +SwigPyObject_New(void *ptr, swig_type_info *ty, int own) +{ + SwigPyObject *sobj = PyObject_NEW(SwigPyObject, SwigPyObject_type()); + if (sobj) { + sobj->ptr = ptr; + sobj->ty = ty; + sobj->own = own; + sobj->next = 0; + } + return (PyObject *)sobj; +} + +/* ----------------------------------------------------------------------------- + * Implements a simple Swig Packed type, and use it instead of string + * ----------------------------------------------------------------------------- */ + +typedef struct { + PyObject_HEAD + void *pack; + swig_type_info *ty; + size_t size; +} SwigPyPacked; + +SWIGRUNTIME int +SwigPyPacked_print(SwigPyPacked *v, FILE *fp, int SWIGUNUSEDPARM(flags)) +{ + char result[SWIG_BUFFER_SIZE]; + fputs("pack, v->size, 0, sizeof(result))) { + fputs("at ", fp); + fputs(result, fp); + } + fputs(v->ty->name,fp); + fputs(">", fp); + return 0; +} + +SWIGRUNTIME PyObject * +SwigPyPacked_repr(SwigPyPacked *v) +{ + char result[SWIG_BUFFER_SIZE]; + if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))) { + return SWIG_Python_str_FromFormat("", result, v->ty->name); + } else { + return SWIG_Python_str_FromFormat("", v->ty->name); + } +} + +SWIGRUNTIME PyObject * +SwigPyPacked_str(SwigPyPacked *v) +{ + char result[SWIG_BUFFER_SIZE]; + if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))){ + return SWIG_Python_str_FromFormat("%s%s", result, v->ty->name); + } else { + return SWIG_Python_str_FromChar(v->ty->name); + } +} + +SWIGRUNTIME int +SwigPyPacked_compare(SwigPyPacked *v, SwigPyPacked *w) +{ + size_t i = v->size; + size_t j = w->size; + int s = (i < j) ? -1 : ((i > j) ? 1 : 0); + return s ? s : strncmp((char *)v->pack, (char *)w->pack, 2*v->size); +} + +SWIGRUNTIME PyTypeObject* SwigPyPacked_TypeOnce(void); + +SWIGRUNTIME PyTypeObject* +SwigPyPacked_type(void) { + static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyPacked_TypeOnce(); + return type; +} + +SWIGRUNTIMEINLINE int +SwigPyPacked_Check(PyObject *op) { + return ((op)->ob_type == SwigPyPacked_TypeOnce()) + || (strcmp((op)->ob_type->tp_name,"SwigPyPacked") == 0); +} + +SWIGRUNTIME void +SwigPyPacked_dealloc(PyObject *v) +{ + if (SwigPyPacked_Check(v)) { + SwigPyPacked *sobj = (SwigPyPacked *) v; + free(sobj->pack); + } + PyObject_DEL(v); +} + +SWIGRUNTIME PyTypeObject* +SwigPyPacked_TypeOnce(void) { + static char swigpacked_doc[] = "Swig object carries a C/C++ instance pointer"; + static PyTypeObject swigpypacked_type; + static int type_init = 0; + if (!type_init) { + const PyTypeObject tmp = { +#if PY_VERSION_HEX>=0x03000000 + PyVarObject_HEAD_INIT(NULL, 0) +#else + PyObject_HEAD_INIT(NULL) + 0, /* ob_size */ +#endif + (char *)"SwigPyPacked", /* tp_name */ + sizeof(SwigPyPacked), /* tp_basicsize */ + 0, /* tp_itemsize */ + (destructor)SwigPyPacked_dealloc, /* tp_dealloc */ + (printfunc)SwigPyPacked_print, /* tp_print */ + (getattrfunc)0, /* tp_getattr */ + (setattrfunc)0, /* tp_setattr */ +#if PY_VERSION_HEX>=0x03000000 + 0, /* tp_reserved in 3.0.1 */ +#else + (cmpfunc)SwigPyPacked_compare, /* tp_compare */ +#endif + (reprfunc)SwigPyPacked_repr, /* tp_repr */ + 0, /* tp_as_number */ + 0, /* tp_as_sequence */ + 0, /* tp_as_mapping */ + (hashfunc)0, /* tp_hash */ + (ternaryfunc)0, /* tp_call */ + (reprfunc)SwigPyPacked_str, /* tp_str */ + PyObject_GenericGetAttr, /* tp_getattro */ + 0, /* tp_setattro */ + 0, /* tp_as_buffer */ + Py_TPFLAGS_DEFAULT, /* tp_flags */ + swigpacked_doc, /* tp_doc */ + 0, /* tp_traverse */ + 0, /* tp_clear */ + 0, /* tp_richcompare */ + 0, /* tp_weaklistoffset */ +#if PY_VERSION_HEX >= 0x02020000 + 0, /* tp_iter */ + 0, /* tp_iternext */ + 0, /* tp_methods */ + 0, /* tp_members */ + 0, /* tp_getset */ + 0, /* tp_base */ + 0, /* tp_dict */ + 0, /* tp_descr_get */ + 0, /* tp_descr_set */ + 0, /* tp_dictoffset */ + 0, /* tp_init */ + 0, /* tp_alloc */ + 0, /* tp_new */ + 0, /* tp_free */ + 0, /* tp_is_gc */ + 0, /* tp_bases */ + 0, /* tp_mro */ + 0, /* tp_cache */ + 0, /* tp_subclasses */ + 0, /* tp_weaklist */ +#endif +#if PY_VERSION_HEX >= 0x02030000 + 0, /* tp_del */ +#endif +#if PY_VERSION_HEX >= 0x02060000 + 0, /* tp_version_tag */ +#endif +#if PY_VERSION_HEX >= 0x03040000 + 0, /* tp_finalize */ +#endif +#ifdef COUNT_ALLOCS + 0, /* tp_allocs */ + 0, /* tp_frees */ + 0, /* tp_maxalloc */ +#if PY_VERSION_HEX >= 0x02050000 + 0, /* tp_prev */ +#endif + 0 /* tp_next */ +#endif + }; + swigpypacked_type = tmp; + type_init = 1; +#if PY_VERSION_HEX < 0x02020000 + swigpypacked_type.ob_type = &PyType_Type; +#else + if (PyType_Ready(&swigpypacked_type) < 0) + return NULL; +#endif + } + return &swigpypacked_type; +} + +SWIGRUNTIME PyObject * +SwigPyPacked_New(void *ptr, size_t size, swig_type_info *ty) +{ + SwigPyPacked *sobj = PyObject_NEW(SwigPyPacked, SwigPyPacked_type()); + if (sobj) { + void *pack = malloc(size); + if (pack) { + memcpy(pack, ptr, size); + sobj->pack = pack; + sobj->ty = ty; + sobj->size = size; + } else { + PyObject_DEL((PyObject *) sobj); + sobj = 0; + } + } + return (PyObject *) sobj; +} + +SWIGRUNTIME swig_type_info * +SwigPyPacked_UnpackData(PyObject *obj, void *ptr, size_t size) +{ + if (SwigPyPacked_Check(obj)) { + SwigPyPacked *sobj = (SwigPyPacked *)obj; + if (sobj->size != size) return 0; + memcpy(ptr, sobj->pack, size); + return sobj->ty; + } else { + return 0; + } +} + +/* ----------------------------------------------------------------------------- + * pointers/data manipulation + * ----------------------------------------------------------------------------- */ + +SWIGRUNTIMEINLINE PyObject * +_SWIG_This(void) +{ + return SWIG_Python_str_FromChar("this"); +} + +static PyObject *swig_this = NULL; + +SWIGRUNTIME PyObject * +SWIG_This(void) +{ + if (swig_this == NULL) + swig_this = _SWIG_This(); + return swig_this; +} + +/* #define SWIG_PYTHON_SLOW_GETSET_THIS */ + +/* TODO: I don't know how to implement the fast getset in Python 3 right now */ +#if PY_VERSION_HEX>=0x03000000 +#define SWIG_PYTHON_SLOW_GETSET_THIS +#endif + +SWIGRUNTIME SwigPyObject * +SWIG_Python_GetSwigThis(PyObject *pyobj) +{ + PyObject *obj; + + if (SwigPyObject_Check(pyobj)) + return (SwigPyObject *) pyobj; + +#ifdef SWIGPYTHON_BUILTIN + (void)obj; +# ifdef PyWeakref_CheckProxy + if (PyWeakref_CheckProxy(pyobj)) { + pyobj = PyWeakref_GET_OBJECT(pyobj); + if (pyobj && SwigPyObject_Check(pyobj)) + return (SwigPyObject*) pyobj; + } +# endif + return NULL; +#else + + obj = 0; + +#if (!defined(SWIG_PYTHON_SLOW_GETSET_THIS) && (PY_VERSION_HEX >= 0x02030000)) + if (PyInstance_Check(pyobj)) { + obj = _PyInstance_Lookup(pyobj, SWIG_This()); + } else { + PyObject **dictptr = _PyObject_GetDictPtr(pyobj); + if (dictptr != NULL) { + PyObject *dict = *dictptr; + obj = dict ? PyDict_GetItem(dict, SWIG_This()) : 0; + } else { +#ifdef PyWeakref_CheckProxy + if (PyWeakref_CheckProxy(pyobj)) { + PyObject *wobj = PyWeakref_GET_OBJECT(pyobj); + return wobj ? SWIG_Python_GetSwigThis(wobj) : 0; + } +#endif + obj = PyObject_GetAttr(pyobj,SWIG_This()); + if (obj) { + Py_DECREF(obj); + } else { + if (PyErr_Occurred()) PyErr_Clear(); + return 0; + } + } + } +#else + obj = PyObject_GetAttr(pyobj,SWIG_This()); + if (obj) { + Py_DECREF(obj); + } else { + if (PyErr_Occurred()) PyErr_Clear(); + return 0; + } +#endif + if (obj && !SwigPyObject_Check(obj)) { + /* a PyObject is called 'this', try to get the 'real this' + SwigPyObject from it */ + return SWIG_Python_GetSwigThis(obj); + } + return (SwigPyObject *)obj; +#endif +} + +/* Acquire a pointer value */ + +SWIGRUNTIME int +SWIG_Python_AcquirePtr(PyObject *obj, int own) { + if (own == SWIG_POINTER_OWN) { + SwigPyObject *sobj = SWIG_Python_GetSwigThis(obj); + if (sobj) { + int oldown = sobj->own; + sobj->own = own; + return oldown; + } + } + return 0; +} + +/* Convert a pointer value */ + +SWIGRUNTIME int +SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) { + int res; + SwigPyObject *sobj; + int implicit_conv = (flags & SWIG_POINTER_IMPLICIT_CONV) != 0; + + if (!obj) + return SWIG_ERROR; + if (obj == Py_None && !implicit_conv) { + if (ptr) + *ptr = 0; + return SWIG_OK; + } + + res = SWIG_ERROR; + + sobj = SWIG_Python_GetSwigThis(obj); + if (own) + *own = 0; + while (sobj) { + void *vptr = sobj->ptr; + if (ty) { + swig_type_info *to = sobj->ty; + if (to == ty) { + /* no type cast needed */ + if (ptr) *ptr = vptr; + break; + } else { + swig_cast_info *tc = SWIG_TypeCheck(to->name,ty); + if (!tc) { + sobj = (SwigPyObject *)sobj->next; + } else { + if (ptr) { + int newmemory = 0; + *ptr = SWIG_TypeCast(tc,vptr,&newmemory); + if (newmemory == SWIG_CAST_NEW_MEMORY) { + assert(own); /* badly formed typemap which will lead to a memory leak - it must set and use own to delete *ptr */ + if (own) + *own = *own | SWIG_CAST_NEW_MEMORY; + } + } + break; + } + } + } else { + if (ptr) *ptr = vptr; + break; + } + } + if (sobj) { + if (own) + *own = *own | sobj->own; + if (flags & SWIG_POINTER_DISOWN) { + sobj->own = 0; + } + res = SWIG_OK; + } else { + if (implicit_conv) { + SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0; + if (data && !data->implicitconv) { + PyObject *klass = data->klass; + if (klass) { + PyObject *impconv; + data->implicitconv = 1; /* avoid recursion and call 'explicit' constructors*/ + impconv = SWIG_Python_CallFunctor(klass, obj); + data->implicitconv = 0; + if (PyErr_Occurred()) { + PyErr_Clear(); + impconv = 0; + } + if (impconv) { + SwigPyObject *iobj = SWIG_Python_GetSwigThis(impconv); + if (iobj) { + void *vptr; + res = SWIG_Python_ConvertPtrAndOwn((PyObject*)iobj, &vptr, ty, 0, 0); + if (SWIG_IsOK(res)) { + if (ptr) { + *ptr = vptr; + /* transfer the ownership to 'ptr' */ + iobj->own = 0; + res = SWIG_AddCast(res); + res = SWIG_AddNewMask(res); + } else { + res = SWIG_AddCast(res); + } + } + } + Py_DECREF(impconv); + } + } + } + } + if (!SWIG_IsOK(res) && obj == Py_None) { + if (ptr) + *ptr = 0; + if (PyErr_Occurred()) + PyErr_Clear(); + res = SWIG_OK; + } + } + return res; +} + +/* Convert a function ptr value */ + +SWIGRUNTIME int +SWIG_Python_ConvertFunctionPtr(PyObject *obj, void **ptr, swig_type_info *ty) { + if (!PyCFunction_Check(obj)) { + return SWIG_ConvertPtr(obj, ptr, ty, 0); + } else { + void *vptr = 0; + + /* here we get the method pointer for callbacks */ + const char *doc = (((PyCFunctionObject *)obj) -> m_ml -> ml_doc); + const char *desc = doc ? strstr(doc, "swig_ptr: ") : 0; + if (desc) + desc = ty ? SWIG_UnpackVoidPtr(desc + 10, &vptr, ty->name) : 0; + if (!desc) + return SWIG_ERROR; + if (ty) { + swig_cast_info *tc = SWIG_TypeCheck(desc,ty); + if (tc) { + int newmemory = 0; + *ptr = SWIG_TypeCast(tc,vptr,&newmemory); + assert(!newmemory); /* newmemory handling not yet implemented */ + } else { + return SWIG_ERROR; + } + } else { + *ptr = vptr; + } + return SWIG_OK; + } +} + +/* Convert a packed value value */ + +SWIGRUNTIME int +SWIG_Python_ConvertPacked(PyObject *obj, void *ptr, size_t sz, swig_type_info *ty) { + swig_type_info *to = SwigPyPacked_UnpackData(obj, ptr, sz); + if (!to) return SWIG_ERROR; + if (ty) { + if (to != ty) { + /* check type cast? */ + swig_cast_info *tc = SWIG_TypeCheck(to->name,ty); + if (!tc) return SWIG_ERROR; + } + } + return SWIG_OK; +} + +/* ----------------------------------------------------------------------------- + * Create a new pointer object + * ----------------------------------------------------------------------------- */ + +/* + Create a new instance object, without calling __init__, and set the + 'this' attribute. +*/ + +SWIGRUNTIME PyObject* +SWIG_Python_NewShadowInstance(SwigPyClientData *data, PyObject *swig_this) +{ +#if (PY_VERSION_HEX >= 0x02020000) + PyObject *inst = 0; + PyObject *newraw = data->newraw; + if (newraw) { + inst = PyObject_Call(newraw, data->newargs, NULL); + if (inst) { +#if !defined(SWIG_PYTHON_SLOW_GETSET_THIS) + PyObject **dictptr = _PyObject_GetDictPtr(inst); + if (dictptr != NULL) { + PyObject *dict = *dictptr; + if (dict == NULL) { + dict = PyDict_New(); + *dictptr = dict; + PyDict_SetItem(dict, SWIG_This(), swig_this); + } + } +#else + PyObject *key = SWIG_This(); + PyObject_SetAttr(inst, key, swig_this); +#endif + } + } else { +#if PY_VERSION_HEX >= 0x03000000 + inst = ((PyTypeObject*) data->newargs)->tp_new((PyTypeObject*) data->newargs, Py_None, Py_None); + if (inst) { + PyObject_SetAttr(inst, SWIG_This(), swig_this); + Py_TYPE(inst)->tp_flags &= ~Py_TPFLAGS_VALID_VERSION_TAG; + } +#else + PyObject *dict = PyDict_New(); + if (dict) { + PyDict_SetItem(dict, SWIG_This(), swig_this); + inst = PyInstance_NewRaw(data->newargs, dict); + Py_DECREF(dict); + } +#endif + } + return inst; +#else +#if (PY_VERSION_HEX >= 0x02010000) + PyObject *inst = 0; + PyObject *dict = PyDict_New(); + if (dict) { + PyDict_SetItem(dict, SWIG_This(), swig_this); + inst = PyInstance_NewRaw(data->newargs, dict); + Py_DECREF(dict); + } + return (PyObject *) inst; +#else + PyInstanceObject *inst = PyObject_NEW(PyInstanceObject, &PyInstance_Type); + if (inst == NULL) { + return NULL; + } + inst->in_class = (PyClassObject *)data->newargs; + Py_INCREF(inst->in_class); + inst->in_dict = PyDict_New(); + if (inst->in_dict == NULL) { + Py_DECREF(inst); + return NULL; + } +#ifdef Py_TPFLAGS_HAVE_WEAKREFS + inst->in_weakreflist = NULL; +#endif +#ifdef Py_TPFLAGS_GC + PyObject_GC_Init(inst); +#endif + PyDict_SetItem(inst->in_dict, SWIG_This(), swig_this); + return (PyObject *) inst; +#endif +#endif +} + +SWIGRUNTIME void +SWIG_Python_SetSwigThis(PyObject *inst, PyObject *swig_this) +{ + PyObject *dict; +#if (PY_VERSION_HEX >= 0x02020000) && !defined(SWIG_PYTHON_SLOW_GETSET_THIS) + PyObject **dictptr = _PyObject_GetDictPtr(inst); + if (dictptr != NULL) { + dict = *dictptr; + if (dict == NULL) { + dict = PyDict_New(); + *dictptr = dict; + } + PyDict_SetItem(dict, SWIG_This(), swig_this); + return; + } +#endif + dict = PyObject_GetAttrString(inst, (char*)"__dict__"); + PyDict_SetItem(dict, SWIG_This(), swig_this); + Py_DECREF(dict); +} + + +SWIGINTERN PyObject * +SWIG_Python_InitShadowInstance(PyObject *args) { + PyObject *obj[2]; + if (!SWIG_Python_UnpackTuple(args, "swiginit", 2, 2, obj)) { + return NULL; + } else { + SwigPyObject *sthis = SWIG_Python_GetSwigThis(obj[0]); + if (sthis) { + SwigPyObject_append((PyObject*) sthis, obj[1]); + } else { + SWIG_Python_SetSwigThis(obj[0], obj[1]); + } + return SWIG_Py_Void(); + } +} + +/* Create a new pointer object */ + +SWIGRUNTIME PyObject * +SWIG_Python_NewPointerObj(PyObject *self, void *ptr, swig_type_info *type, int flags) { + SwigPyClientData *clientdata; + PyObject * robj; + int own; + + if (!ptr) + return SWIG_Py_Void(); + + clientdata = type ? (SwigPyClientData *)(type->clientdata) : 0; + own = (flags & SWIG_POINTER_OWN) ? SWIG_POINTER_OWN : 0; + if (clientdata && clientdata->pytype) { + SwigPyObject *newobj; + if (flags & SWIG_BUILTIN_TP_INIT) { + newobj = (SwigPyObject*) self; + if (newobj->ptr) { + PyObject *next_self = clientdata->pytype->tp_alloc(clientdata->pytype, 0); + while (newobj->next) + newobj = (SwigPyObject *) newobj->next; + newobj->next = next_self; + newobj = (SwigPyObject *)next_self; +#ifdef SWIGPYTHON_BUILTIN + newobj->dict = 0; +#endif + } + } else { + newobj = PyObject_New(SwigPyObject, clientdata->pytype); +#ifdef SWIGPYTHON_BUILTIN + newobj->dict = 0; +#endif + } + if (newobj) { + newobj->ptr = ptr; + newobj->ty = type; + newobj->own = own; + newobj->next = 0; + return (PyObject*) newobj; + } + return SWIG_Py_Void(); + } + + assert(!(flags & SWIG_BUILTIN_TP_INIT)); + + robj = SwigPyObject_New(ptr, type, own); + if (robj && clientdata && !(flags & SWIG_POINTER_NOSHADOW)) { + PyObject *inst = SWIG_Python_NewShadowInstance(clientdata, robj); + Py_DECREF(robj); + robj = inst; + } + return robj; +} + +/* Create a new packed object */ + +SWIGRUNTIMEINLINE PyObject * +SWIG_Python_NewPackedObj(void *ptr, size_t sz, swig_type_info *type) { + return ptr ? SwigPyPacked_New((void *) ptr, sz, type) : SWIG_Py_Void(); +} + +/* -----------------------------------------------------------------------------* + * Get type list + * -----------------------------------------------------------------------------*/ + +#ifdef SWIG_LINK_RUNTIME +void *SWIG_ReturnGlobalTypeList(void *); +#endif + +SWIGRUNTIME swig_module_info * +SWIG_Python_GetModule(void *SWIGUNUSEDPARM(clientdata)) { + static void *type_pointer = (void *)0; + /* first check if module already created */ + if (!type_pointer) { +#ifdef SWIG_LINK_RUNTIME + type_pointer = SWIG_ReturnGlobalTypeList((void *)0); +#else +# ifdef SWIGPY_USE_CAPSULE + type_pointer = PyCapsule_Import(SWIGPY_CAPSULE_NAME, 0); +# else + type_pointer = PyCObject_Import((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION, + (char*)"type_pointer" SWIG_TYPE_TABLE_NAME); +# endif + if (PyErr_Occurred()) { + PyErr_Clear(); + type_pointer = (void *)0; + } +#endif + } + return (swig_module_info *) type_pointer; +} + +#if PY_MAJOR_VERSION < 2 +/* PyModule_AddObject function was introduced in Python 2.0. The following function + is copied out of Python/modsupport.c in python version 2.3.4 */ +SWIGINTERN int +PyModule_AddObject(PyObject *m, char *name, PyObject *o) +{ + PyObject *dict; + if (!PyModule_Check(m)) { + PyErr_SetString(PyExc_TypeError, "PyModule_AddObject() needs module as first arg"); + return SWIG_ERROR; + } + if (!o) { + PyErr_SetString(PyExc_TypeError, "PyModule_AddObject() needs non-NULL value"); + return SWIG_ERROR; + } + + dict = PyModule_GetDict(m); + if (dict == NULL) { + /* Internal error -- modules must have a dict! */ + PyErr_Format(PyExc_SystemError, "module '%s' has no __dict__", + PyModule_GetName(m)); + return SWIG_ERROR; + } + if (PyDict_SetItemString(dict, name, o)) + return SWIG_ERROR; + Py_DECREF(o); + return SWIG_OK; +} +#endif + +SWIGRUNTIME void +#ifdef SWIGPY_USE_CAPSULE +SWIG_Python_DestroyModule(PyObject *obj) +#else +SWIG_Python_DestroyModule(void *vptr) +#endif +{ +#ifdef SWIGPY_USE_CAPSULE + swig_module_info *swig_module = (swig_module_info *) PyCapsule_GetPointer(obj, SWIGPY_CAPSULE_NAME); +#else + swig_module_info *swig_module = (swig_module_info *) vptr; +#endif + swig_type_info **types = swig_module->types; + size_t i; + for (i =0; i < swig_module->size; ++i) { + swig_type_info *ty = types[i]; + if (ty->owndata) { + SwigPyClientData *data = (SwigPyClientData *) ty->clientdata; + if (data) SwigPyClientData_Del(data); + } + } + Py_DECREF(SWIG_This()); + swig_this = NULL; +} + +SWIGRUNTIME void +SWIG_Python_SetModule(swig_module_info *swig_module) { +#if PY_VERSION_HEX >= 0x03000000 + /* Add a dummy module object into sys.modules */ + PyObject *module = PyImport_AddModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION); +#else + static PyMethodDef swig_empty_runtime_method_table[] = { {NULL, NULL, 0, NULL} }; /* Sentinel */ + PyObject *module = Py_InitModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION, swig_empty_runtime_method_table); +#endif +#ifdef SWIGPY_USE_CAPSULE + PyObject *pointer = PyCapsule_New((void *) swig_module, SWIGPY_CAPSULE_NAME, SWIG_Python_DestroyModule); + if (pointer && module) { + PyModule_AddObject(module, (char*)"type_pointer_capsule" SWIG_TYPE_TABLE_NAME, pointer); + } else { + Py_XDECREF(pointer); + } +#else + PyObject *pointer = PyCObject_FromVoidPtr((void *) swig_module, SWIG_Python_DestroyModule); + if (pointer && module) { + PyModule_AddObject(module, (char*)"type_pointer" SWIG_TYPE_TABLE_NAME, pointer); + } else { + Py_XDECREF(pointer); + } +#endif +} + +/* The python cached type query */ +SWIGRUNTIME PyObject * +SWIG_Python_TypeCache(void) { + static PyObject *SWIG_STATIC_POINTER(cache) = PyDict_New(); + return cache; +} + +SWIGRUNTIME swig_type_info * +SWIG_Python_TypeQuery(const char *type) +{ + PyObject *cache = SWIG_Python_TypeCache(); + PyObject *key = SWIG_Python_str_FromChar(type); + PyObject *obj = PyDict_GetItem(cache, key); + swig_type_info *descriptor; + if (obj) { +#ifdef SWIGPY_USE_CAPSULE + descriptor = (swig_type_info *) PyCapsule_GetPointer(obj, NULL); +#else + descriptor = (swig_type_info *) PyCObject_AsVoidPtr(obj); +#endif + } else { + swig_module_info *swig_module = SWIG_GetModule(0); + descriptor = SWIG_TypeQueryModule(swig_module, swig_module, type); + if (descriptor) { +#ifdef SWIGPY_USE_CAPSULE + obj = PyCapsule_New((void*) descriptor, NULL, NULL); +#else + obj = PyCObject_FromVoidPtr(descriptor, NULL); +#endif + PyDict_SetItem(cache, key, obj); + Py_DECREF(obj); + } + } + Py_DECREF(key); + return descriptor; +} + +/* + For backward compatibility only +*/ +#define SWIG_POINTER_EXCEPTION 0 +#define SWIG_arg_fail(arg) SWIG_Python_ArgFail(arg) +#define SWIG_MustGetPtr(p, type, argnum, flags) SWIG_Python_MustGetPtr(p, type, argnum, flags) + +SWIGRUNTIME int +SWIG_Python_AddErrMesg(const char* mesg, int infront) +{ + if (PyErr_Occurred()) { + PyObject *type = 0; + PyObject *value = 0; + PyObject *traceback = 0; + PyErr_Fetch(&type, &value, &traceback); + if (value) { + char *tmp; + PyObject *old_str = PyObject_Str(value); + Py_XINCREF(type); + PyErr_Clear(); + if (infront) { + PyErr_Format(type, "%s %s", mesg, tmp = SWIG_Python_str_AsChar(old_str)); + } else { + PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg); + } + SWIG_Python_str_DelForPy3(tmp); + Py_DECREF(old_str); + } + return 1; + } else { + return 0; + } +} + +SWIGRUNTIME int +SWIG_Python_ArgFail(int argnum) +{ + if (PyErr_Occurred()) { + /* add information about failing argument */ + char mesg[256]; + PyOS_snprintf(mesg, sizeof(mesg), "argument number %d:", argnum); + return SWIG_Python_AddErrMesg(mesg, 1); + } else { + return 0; + } +} + +SWIGRUNTIMEINLINE const char * +SwigPyObject_GetDesc(PyObject *self) +{ + SwigPyObject *v = (SwigPyObject *)self; + swig_type_info *ty = v ? v->ty : 0; + return ty ? ty->str : ""; +} + +SWIGRUNTIME void +SWIG_Python_TypeError(const char *type, PyObject *obj) +{ + if (type) { +#if defined(SWIG_COBJECT_TYPES) + if (obj && SwigPyObject_Check(obj)) { + const char *otype = (const char *) SwigPyObject_GetDesc(obj); + if (otype) { + PyErr_Format(PyExc_TypeError, "a '%s' is expected, 'SwigPyObject(%s)' is received", + type, otype); + return; + } + } else +#endif + { + const char *otype = (obj ? obj->ob_type->tp_name : 0); + if (otype) { + PyObject *str = PyObject_Str(obj); + const char *cstr = str ? SWIG_Python_str_AsChar(str) : 0; + if (cstr) { + PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s(%s)' is received", + type, otype, cstr); + SWIG_Python_str_DelForPy3(cstr); + } else { + PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s' is received", + type, otype); + } + Py_XDECREF(str); + return; + } + } + PyErr_Format(PyExc_TypeError, "a '%s' is expected", type); + } else { + PyErr_Format(PyExc_TypeError, "unexpected type is received"); + } +} + + +/* Convert a pointer value, signal an exception on a type mismatch */ +SWIGRUNTIME void * +SWIG_Python_MustGetPtr(PyObject *obj, swig_type_info *ty, int SWIGUNUSEDPARM(argnum), int flags) { + void *result; + if (SWIG_Python_ConvertPtr(obj, &result, ty, flags) == -1) { + PyErr_Clear(); +#if SWIG_POINTER_EXCEPTION + if (flags) { + SWIG_Python_TypeError(SWIG_TypePrettyName(ty), obj); + SWIG_Python_ArgFail(argnum); + } +#endif + } + return result; +} + +#ifdef SWIGPYTHON_BUILTIN +SWIGRUNTIME int +SWIG_Python_NonDynamicSetAttr(PyObject *obj, PyObject *name, PyObject *value) { + PyTypeObject *tp = obj->ob_type; + PyObject *descr; + PyObject *encoded_name; + descrsetfunc f; + int res = -1; + +# ifdef Py_USING_UNICODE + if (PyString_Check(name)) { + name = PyUnicode_Decode(PyString_AsString(name), PyString_Size(name), NULL, NULL); + if (!name) + return -1; + } else if (!PyUnicode_Check(name)) +# else + if (!PyString_Check(name)) +# endif + { + PyErr_Format(PyExc_TypeError, "attribute name must be string, not '%.200s'", name->ob_type->tp_name); + return -1; + } else { + Py_INCREF(name); + } + + if (!tp->tp_dict) { + if (PyType_Ready(tp) < 0) + goto done; + } + + descr = _PyType_Lookup(tp, name); + f = NULL; + if (descr != NULL) + f = descr->ob_type->tp_descr_set; + if (!f) { + if (PyString_Check(name)) { + encoded_name = name; + Py_INCREF(name); + } else { + encoded_name = PyUnicode_AsUTF8String(name); + } + PyErr_Format(PyExc_AttributeError, "'%.100s' object has no attribute '%.200s'", tp->tp_name, PyString_AsString(encoded_name)); + Py_DECREF(encoded_name); + } else { + res = f(descr, obj, value); + } + + done: + Py_DECREF(name); + return res; +} +#endif + + +#ifdef __cplusplus +} +#endif + + + +#define SWIG_exception_fail(code, msg) do { SWIG_Error(code, msg); SWIG_fail; } while(0) + +#define SWIG_contract_assert(expr, msg) if (!(expr)) { SWIG_Error(SWIG_RuntimeError, msg); SWIG_fail; } else + + + +/* -------- TYPES TABLE (BEGIN) -------- */ + +#define SWIGTYPE_p_char swig_types[0] +static swig_type_info *swig_types[2]; +static swig_module_info swig_module = {swig_types, 1, 0, 0, 0, 0}; +#define SWIG_TypeQuery(name) SWIG_TypeQueryModule(&swig_module, &swig_module, name) +#define SWIG_MangledTypeQuery(name) SWIG_MangledTypeQueryModule(&swig_module, &swig_module, name) + +/* -------- TYPES TABLE (END) -------- */ + +#if (PY_VERSION_HEX <= 0x02000000) +# if !defined(SWIG_PYTHON_CLASSIC) +# error "This python version requires swig to be run with the '-classic' option" +# endif +#endif + +/*----------------------------------------------- + @(target):= _libpymolfile.so + ------------------------------------------------*/ +#if PY_VERSION_HEX >= 0x03000000 +# define SWIG_init PyInit__libpymolfile + +#else +# define SWIG_init init_libpymolfile + +#endif +#define SWIG_name "_libpymolfile" + +#define SWIGVERSION 0x030012 +#define SWIG_VERSION SWIGVERSION + + +#define SWIG_as_voidptr(a) const_cast< void * >(static_cast< const void * >(a)) +#define SWIG_as_voidptrptr(a) ((void)SWIG_as_voidptr(*a),reinterpret_cast< void** >(a)) + + +#include + + +namespace swig { + class SwigPtr_PyObject { + protected: + PyObject *_obj; + + public: + SwigPtr_PyObject() :_obj(0) + { + } + + SwigPtr_PyObject(const SwigPtr_PyObject& item) : _obj(item._obj) + { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + Py_XINCREF(_obj); + SWIG_PYTHON_THREAD_END_BLOCK; + } + + SwigPtr_PyObject(PyObject *obj, bool initial_ref = true) :_obj(obj) + { + if (initial_ref) { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + Py_XINCREF(_obj); + SWIG_PYTHON_THREAD_END_BLOCK; + } + } + + SwigPtr_PyObject & operator=(const SwigPtr_PyObject& item) + { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + Py_XINCREF(item._obj); + Py_XDECREF(_obj); + _obj = item._obj; + SWIG_PYTHON_THREAD_END_BLOCK; + return *this; + } + + ~SwigPtr_PyObject() + { + SWIG_PYTHON_THREAD_BEGIN_BLOCK; + Py_XDECREF(_obj); + SWIG_PYTHON_THREAD_END_BLOCK; + } + + operator PyObject *() const + { + return _obj; + } + + PyObject *operator->() const + { + return _obj; + } + }; +} + + +namespace swig { + struct SwigVar_PyObject : SwigPtr_PyObject { + SwigVar_PyObject(PyObject* obj = 0) : SwigPtr_PyObject(obj, false) { } + + SwigVar_PyObject & operator = (PyObject* obj) + { + Py_XDECREF(_obj); + _obj = obj; + return *this; + } + }; +} + + +/* Python SWIG interface to libpymolfile + Copyright (c) 2017 Berk Onat + Published with UIUC LICENSE + */ +#define SWIG_FILE_WITH_INIT +#define __STDC_FORMAT_MACROS +#include +#include +#include +#include +#include +#include "pymolfile.h" + + +#ifndef SWIG_FILE_WITH_INIT +#define NO_IMPORT_ARRAY +#endif +#include "stdio.h" +#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION +#include + + +#include + + +#include +#if !defined(SWIG_NO_LLONG_MAX) +# if !defined(LLONG_MAX) && defined(__GNUC__) && defined (__LONG_LONG_MAX__) +# define LLONG_MAX __LONG_LONG_MAX__ +# define LLONG_MIN (-LLONG_MAX - 1LL) +# define ULLONG_MAX (LLONG_MAX * 2ULL + 1ULL) +# endif +#endif + + +SWIGINTERN int +SWIG_AsVal_double (PyObject *obj, double *val) +{ + int res = SWIG_TypeError; + if (PyFloat_Check(obj)) { + if (val) *val = PyFloat_AsDouble(obj); + return SWIG_OK; +#if PY_VERSION_HEX < 0x03000000 + } else if (PyInt_Check(obj)) { + if (val) *val = (double) PyInt_AsLong(obj); + return SWIG_OK; +#endif + } else if (PyLong_Check(obj)) { + double v = PyLong_AsDouble(obj); + if (!PyErr_Occurred()) { + if (val) *val = v; + return SWIG_OK; + } else { + PyErr_Clear(); + } + } +#ifdef SWIG_PYTHON_CAST_MODE + { + int dispatch = 0; + double d = PyFloat_AsDouble(obj); + if (!PyErr_Occurred()) { + if (val) *val = d; + return SWIG_AddCast(SWIG_OK); + } else { + PyErr_Clear(); + } + if (!dispatch) { + long v = PyLong_AsLong(obj); + if (!PyErr_Occurred()) { + if (val) *val = v; + return SWIG_AddCast(SWIG_AddCast(SWIG_OK)); + } else { + PyErr_Clear(); + } + } + } +#endif + return res; +} + + +#include + + +#include + + +SWIGINTERNINLINE int +SWIG_CanCastAsInteger(double *d, double min, double max) { + double x = *d; + if ((min <= x && x <= max)) { + double fx = floor(x); + double cx = ceil(x); + double rd = ((x - fx) < 0.5) ? fx : cx; /* simple rint */ + if ((errno == EDOM) || (errno == ERANGE)) { + errno = 0; + } else { + double summ, reps, diff; + if (rd < x) { + diff = x - rd; + } else if (rd > x) { + diff = rd - x; + } else { + return 1; + } + summ = rd + x; + reps = diff/summ; + if (reps < 8*DBL_EPSILON) { + *d = rd; + return 1; + } + } + } + return 0; +} + + +SWIGINTERN int +SWIG_AsVal_long (PyObject *obj, long* val) +{ +#if PY_VERSION_HEX < 0x03000000 + if (PyInt_Check(obj)) { + if (val) *val = PyInt_AsLong(obj); + return SWIG_OK; + } else +#endif + if (PyLong_Check(obj)) { + long v = PyLong_AsLong(obj); + if (!PyErr_Occurred()) { + if (val) *val = v; + return SWIG_OK; + } else { + PyErr_Clear(); + return SWIG_OverflowError; + } + } +#ifdef SWIG_PYTHON_CAST_MODE + { + int dispatch = 0; + long v = PyInt_AsLong(obj); + if (!PyErr_Occurred()) { + if (val) *val = v; + return SWIG_AddCast(SWIG_OK); + } else { + PyErr_Clear(); + } + if (!dispatch) { + double d; + int res = SWIG_AddCast(SWIG_AsVal_double (obj,&d)); + if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) { + if (val) *val = (long)(d); + return res; + } + } + } +#endif + return SWIG_TypeError; +} + + +SWIGINTERN int +SWIG_AsVal_int (PyObject * obj, int *val) +{ + long v; + int res = SWIG_AsVal_long (obj, &v); + if (SWIG_IsOK(res)) { + if ((v < INT_MIN || v > INT_MAX)) { + return SWIG_OverflowError; + } else { + if (val) *val = static_cast< int >(v); + } + } + return res; +} + + +SWIGINTERNINLINE PyObject* + SWIG_From_int (int value) +{ + return PyInt_FromLong((long) value); +} + + +PyObject * my_open_file_read(PyObject* molcapsule, char* fname, char* ftype, int natoms) { + if (PyType_Ready(&MolObjectType) < 0) + return NULL; + PyTypeObject *type = &MolObjectType; + MolObject *plugin_c; + molfile_plugin_t* plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(molcapsule); + plugin_c = (MolObject *)type->tp_alloc(type, 0); + /*plugin_c->plugin = plugin;*/ + plugin_c->plugin = molcapsule; + void *file_handle = plugin->open_file_read(fname, ftype, &natoms); + plugin_c->file_handle = PyMolfileCapsule_FromVoidPtr(file_handle, del_molfile_file_handle); + if (!plugin_c->file_handle) { + Py_RETURN_NONE; + } else { + plugin_c->natoms = natoms; + return (PyObject *)plugin_c; + } + } + + +SWIGINTERN swig_type_info* +SWIG_pchar_descriptor(void) +{ + static int init = 0; + static swig_type_info* info = 0; + if (!init) { + info = SWIG_TypeQuery("_p_char"); + init = 1; + } + return info; +} + + +SWIGINTERN int +SWIG_AsCharPtrAndSize(PyObject *obj, char** cptr, size_t* psize, int *alloc) +{ +#if PY_VERSION_HEX>=0x03000000 +#if defined(SWIG_PYTHON_STRICT_BYTE_CHAR) + if (PyBytes_Check(obj)) +#else + if (PyUnicode_Check(obj)) +#endif +#else + if (PyString_Check(obj)) +#endif + { + char *cstr; Py_ssize_t len; +#if PY_VERSION_HEX>=0x03000000 +#if !defined(SWIG_PYTHON_STRICT_BYTE_CHAR) + if (!alloc && cptr) { + /* We can't allow converting without allocation, since the internal + representation of string in Python 3 is UCS-2/UCS-4 but we require + a UTF-8 representation. + TODO(bhy) More detailed explanation */ + return SWIG_RuntimeError; + } + obj = PyUnicode_AsUTF8String(obj); + if(alloc) *alloc = SWIG_NEWOBJ; +#endif + PyBytes_AsStringAndSize(obj, &cstr, &len); +#else + PyString_AsStringAndSize(obj, &cstr, &len); +#endif + if (cptr) { + if (alloc) { + /* + In python the user should not be able to modify the inner + string representation. To warranty that, if you define + SWIG_PYTHON_SAFE_CSTRINGS, a new/copy of the python string + buffer is always returned. + + The default behavior is just to return the pointer value, + so, be careful. + */ +#if defined(SWIG_PYTHON_SAFE_CSTRINGS) + if (*alloc != SWIG_OLDOBJ) +#else + if (*alloc == SWIG_NEWOBJ) +#endif + { + *cptr = reinterpret_cast< char* >(memcpy(new char[len + 1], cstr, sizeof(char)*(len + 1))); + *alloc = SWIG_NEWOBJ; + } else { + *cptr = cstr; + *alloc = SWIG_OLDOBJ; + } + } else { +#if PY_VERSION_HEX>=0x03000000 +#if defined(SWIG_PYTHON_STRICT_BYTE_CHAR) + *cptr = PyBytes_AsString(obj); +#else + assert(0); /* Should never reach here with Unicode strings in Python 3 */ +#endif +#else + *cptr = SWIG_Python_str_AsChar(obj); +#endif + } + } + if (psize) *psize = len + 1; +#if PY_VERSION_HEX>=0x03000000 && !defined(SWIG_PYTHON_STRICT_BYTE_CHAR) + Py_XDECREF(obj); +#endif + return SWIG_OK; + } else { +#if defined(SWIG_PYTHON_2_UNICODE) +#if defined(SWIG_PYTHON_STRICT_BYTE_CHAR) +#error "Cannot use both SWIG_PYTHON_2_UNICODE and SWIG_PYTHON_STRICT_BYTE_CHAR at once" +#endif +#if PY_VERSION_HEX<0x03000000 + if (PyUnicode_Check(obj)) { + char *cstr; Py_ssize_t len; + if (!alloc && cptr) { + return SWIG_RuntimeError; + } + obj = PyUnicode_AsUTF8String(obj); + if (PyString_AsStringAndSize(obj, &cstr, &len) != -1) { + if (cptr) { + if (alloc) *alloc = SWIG_NEWOBJ; + *cptr = reinterpret_cast< char* >(memcpy(new char[len + 1], cstr, sizeof(char)*(len + 1))); + } + if (psize) *psize = len + 1; + + Py_XDECREF(obj); + return SWIG_OK; + } else { + Py_XDECREF(obj); + } + } +#endif +#endif + + swig_type_info* pchar_descriptor = SWIG_pchar_descriptor(); + if (pchar_descriptor) { + void* vptr = 0; + if (SWIG_ConvertPtr(obj, &vptr, pchar_descriptor, 0) == SWIG_OK) { + if (cptr) *cptr = (char *) vptr; + if (psize) *psize = vptr ? (strlen((char *)vptr) + 1) : 0; + if (alloc) *alloc = SWIG_OLDOBJ; + return SWIG_OK; + } + } + } + return SWIG_TypeError; +} + + + + + +PyObject * my_close_file_read(PyObject* molpack) { + MolObject* plugin_handle = (MolObject*) molpack; + PyObject* plugincapsule = plugin_handle->plugin; + PyObject* filecapsule = plugin_handle->file_handle; + molfile_plugin_t* plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugincapsule); + void *file_handle = (void*) PyMolfileCapsule_AsVoidPtr(filecapsule); + plugin->close_file_read(file_handle); + Py_XDECREF(filecapsule); + Py_XDECREF(plugin_handle->file_handle); + return (PyObject *)plugin_handle; + } + +#ifdef __cplusplus +extern "C" { +#endif +SWIGINTERN PyObject *_wrap_molfile_plugin_list(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + int arg1 ; + int val1 ; + int ecode1 = 0 ; + PyObject * obj0 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"O:molfile_plugin_list",&obj0)) SWIG_fail; + ecode1 = SWIG_AsVal_int(obj0, &val1); + if (!SWIG_IsOK(ecode1)) { + SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "molfile_plugin_list" "', argument " "1"" of type '" "int""'"); + } + arg1 = static_cast< int >(val1); + result = (PyObject *)molfile_plugin_list(arg1); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_molfile_init(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + int result; + + if (!PyArg_ParseTuple(args,(char *)":molfile_init")) SWIG_fail; + result = (int)molfile_init(); + resultobj = SWIG_From_int(static_cast< int >(result)); + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_molfile_finish(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + int result; + + if (!PyArg_ParseTuple(args,(char *)":molfile_finish")) SWIG_fail; + result = (int)molfile_finish(); + resultobj = SWIG_From_int(static_cast< int >(result)); + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_get_plugin(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + int arg2 ; + int val2 ; + int ecode2 = 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OO:get_plugin",&obj0,&obj1)) SWIG_fail; + arg1 = obj0; + ecode2 = SWIG_AsVal_int(obj1, &val2); + if (!SWIG_IsOK(ecode2)) { + SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_plugin" "', argument " "2"" of type '" "int""'"); + } + arg2 = static_cast< int >(val2); + result = (PyObject *)get_plugin(arg1,arg2); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_molfile_plugin_info(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + int arg2 ; + int val2 ; + int ecode2 = 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OO:molfile_plugin_info",&obj0,&obj1)) SWIG_fail; + arg1 = obj0; + ecode2 = SWIG_AsVal_int(obj1, &val2); + if (!SWIG_IsOK(ecode2)) { + SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "molfile_plugin_info" "', argument " "2"" of type '" "int""'"); + } + arg2 = static_cast< int >(val2); + result = (PyObject *)molfile_plugin_info(arg1,arg2); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_open_file_read(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + char *arg2 = (char *) 0 ; + char *arg3 = (char *) 0 ; + int arg4 ; + int res2 ; + char *buf2 = 0 ; + int alloc2 = 0 ; + int res3 ; + char *buf3 = 0 ; + int alloc3 = 0 ; + int val4 ; + int ecode4 = 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject * obj2 = 0 ; + PyObject * obj3 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OOOO:open_file_read",&obj0,&obj1,&obj2,&obj3)) SWIG_fail; + arg1 = obj0; + res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2); + if (!SWIG_IsOK(res2)) { + SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "open_file_read" "', argument " "2"" of type '" "char *""'"); + } + arg2 = reinterpret_cast< char * >(buf2); + res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3); + if (!SWIG_IsOK(res3)) { + SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "open_file_read" "', argument " "3"" of type '" "char *""'"); + } + arg3 = reinterpret_cast< char * >(buf3); + ecode4 = SWIG_AsVal_int(obj3, &val4); + if (!SWIG_IsOK(ecode4)) { + SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "open_file_read" "', argument " "4"" of type '" "int""'"); + } + arg4 = static_cast< int >(val4); + { + result = (PyObject *)my_open_file_read(arg1,arg2,arg3,arg4); + if (PyErr_Occurred()) SWIG_fail; + } + resultobj = result; + if (alloc2 == SWIG_NEWOBJ) delete[] buf2; + if (alloc3 == SWIG_NEWOBJ) delete[] buf3; + return resultobj; +fail: + if (alloc2 == SWIG_NEWOBJ) delete[] buf2; + if (alloc3 == SWIG_NEWOBJ) delete[] buf3; + return NULL; +} + + +SWIGINTERN PyObject *_wrap_close_file_read(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"O:close_file_read",&obj0)) SWIG_fail; + arg1 = obj0; + { + result = (PyObject *)my_close_file_read(arg1); + if (PyErr_Occurred()) SWIG_fail; + } + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_read_fill_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject *arg2 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OO:read_fill_structure",&obj0,&obj1)) SWIG_fail; + arg1 = obj0; + arg2 = obj1; + result = (PyObject *)read_fill_structure(arg1,arg2); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_read_fill_bonds(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"O:read_fill_bonds",&obj0)) SWIG_fail; + arg1 = obj0; + result = (PyObject *)read_fill_bonds(arg1); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_read_fill_angles(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"O:read_fill_angles",&obj0)) SWIG_fail; + arg1 = obj0; + result = (PyObject *)read_fill_angles(arg1); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_read_fill_next_timestep(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"O:read_fill_next_timestep",&obj0)) SWIG_fail; + arg1 = obj0; + result = (PyObject *)read_fill_next_timestep(arg1); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_are_plugins_same(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject *arg2 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OO:are_plugins_same",&obj0,&obj1)) SWIG_fail; + arg1 = obj0; + arg2 = obj1; + result = (PyObject *)are_plugins_same(arg1,arg2); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +SWIGINTERN PyObject *_wrap_are_filehandles_same(PyObject *SWIGUNUSEDPARM(self), PyObject *args) { + PyObject *resultobj = 0; + PyObject *arg1 = (PyObject *) 0 ; + PyObject *arg2 = (PyObject *) 0 ; + PyObject * obj0 = 0 ; + PyObject * obj1 = 0 ; + PyObject *result = 0 ; + + if (!PyArg_ParseTuple(args,(char *)"OO:are_filehandles_same",&obj0,&obj1)) SWIG_fail; + arg1 = obj0; + arg2 = obj1; + result = (PyObject *)are_filehandles_same(arg1,arg2); + resultobj = result; + return resultobj; +fail: + return NULL; +} + + +static PyMethodDef SwigMethods[] = { + { (char *)"SWIG_PyInstanceMethod_New", (PyCFunction)SWIG_PyInstanceMethod_New, METH_O, NULL}, + { (char *)"molfile_plugin_list", _wrap_molfile_plugin_list, METH_VARARGS, (char *)"molfile_plugin_list(maxsize) -> PyObject *"}, + { (char *)"molfile_init", _wrap_molfile_init, METH_VARARGS, (char *)"molfile_init() -> int"}, + { (char *)"molfile_finish", _wrap_molfile_finish, METH_VARARGS, (char *)"molfile_finish() -> int"}, + { (char *)"get_plugin", _wrap_get_plugin, METH_VARARGS, (char *)"get_plugin(molcapsule, plug_no) -> PyObject *"}, + { (char *)"molfile_plugin_info", _wrap_molfile_plugin_info, METH_VARARGS, (char *)"molfile_plugin_info(molcapsule, plugin_no) -> PyObject *"}, + { (char *)"open_file_read", _wrap_open_file_read, METH_VARARGS, (char *)"open_file_read(molcapsule, fname, ftype, natoms) -> PyObject *"}, + { (char *)"close_file_read", _wrap_close_file_read, METH_VARARGS, (char *)"close_file_read(molpack) -> PyObject *"}, + { (char *)"read_fill_structure", _wrap_read_fill_structure, METH_VARARGS, (char *)"read_fill_structure(molpack, prototype) -> PyObject *"}, + { (char *)"read_fill_bonds", _wrap_read_fill_bonds, METH_VARARGS, (char *)"read_fill_bonds(molpack) -> PyObject *"}, + { (char *)"read_fill_angles", _wrap_read_fill_angles, METH_VARARGS, (char *)"read_fill_angles(molpack) -> PyObject *"}, + { (char *)"read_fill_next_timestep", _wrap_read_fill_next_timestep, METH_VARARGS, (char *)"read_fill_next_timestep(molpack) -> PyObject *"}, + { (char *)"are_plugins_same", _wrap_are_plugins_same, METH_VARARGS, (char *)"are_plugins_same(molpack_a, molpack_b) -> PyObject *"}, + { (char *)"are_filehandles_same", _wrap_are_filehandles_same, METH_VARARGS, (char *)"are_filehandles_same(molpack_a, molpack_b) -> PyObject *"}, + { NULL, NULL, 0, NULL } +}; + + +/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (BEGIN) -------- */ + +static swig_type_info _swigt__p_char = {"_p_char", "char *", 0, 0, (void*)0, 0}; + +static swig_type_info *swig_type_initial[] = { + &_swigt__p_char, +}; + +static swig_cast_info _swigc__p_char[] = { {&_swigt__p_char, 0, 0, 0},{0, 0, 0, 0}}; + +static swig_cast_info *swig_cast_initial[] = { + _swigc__p_char, +}; + + +/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (END) -------- */ + +static swig_const_info swig_const_table[] = { +{0, 0, 0, 0.0, 0, 0}}; + +#ifdef __cplusplus +} +#endif +/* ----------------------------------------------------------------------------- + * Type initialization: + * This problem is tough by the requirement that no dynamic + * memory is used. Also, since swig_type_info structures store pointers to + * swig_cast_info structures and swig_cast_info structures store pointers back + * to swig_type_info structures, we need some lookup code at initialization. + * The idea is that swig generates all the structures that are needed. + * The runtime then collects these partially filled structures. + * The SWIG_InitializeModule function takes these initial arrays out of + * swig_module, and does all the lookup, filling in the swig_module.types + * array with the correct data and linking the correct swig_cast_info + * structures together. + * + * The generated swig_type_info structures are assigned statically to an initial + * array. We just loop through that array, and handle each type individually. + * First we lookup if this type has been already loaded, and if so, use the + * loaded structure instead of the generated one. Then we have to fill in the + * cast linked list. The cast data is initially stored in something like a + * two-dimensional array. Each row corresponds to a type (there are the same + * number of rows as there are in the swig_type_initial array). Each entry in + * a column is one of the swig_cast_info structures for that type. + * The cast_initial array is actually an array of arrays, because each row has + * a variable number of columns. So to actually build the cast linked list, + * we find the array of casts associated with the type, and loop through it + * adding the casts to the list. The one last trick we need to do is making + * sure the type pointer in the swig_cast_info struct is correct. + * + * First off, we lookup the cast->type name to see if it is already loaded. + * There are three cases to handle: + * 1) If the cast->type has already been loaded AND the type we are adding + * casting info to has not been loaded (it is in this module), THEN we + * replace the cast->type pointer with the type pointer that has already + * been loaded. + * 2) If BOTH types (the one we are adding casting info to, and the + * cast->type) are loaded, THEN the cast info has already been loaded by + * the previous module so we just ignore it. + * 3) Finally, if cast->type has not already been loaded, then we add that + * swig_cast_info to the linked list (because the cast->type) pointer will + * be correct. + * ----------------------------------------------------------------------------- */ + +#ifdef __cplusplus +extern "C" { +#if 0 +} /* c-mode */ +#endif +#endif + +#if 0 +#define SWIGRUNTIME_DEBUG +#endif + + +SWIGRUNTIME void +SWIG_InitializeModule(void *clientdata) { + size_t i; + swig_module_info *module_head, *iter; + int init; + + /* check to see if the circular list has been setup, if not, set it up */ + if (swig_module.next==0) { + /* Initialize the swig_module */ + swig_module.type_initial = swig_type_initial; + swig_module.cast_initial = swig_cast_initial; + swig_module.next = &swig_module; + init = 1; + } else { + init = 0; + } + + /* Try and load any already created modules */ + module_head = SWIG_GetModule(clientdata); + if (!module_head) { + /* This is the first module loaded for this interpreter */ + /* so set the swig module into the interpreter */ + SWIG_SetModule(clientdata, &swig_module); + } else { + /* the interpreter has loaded a SWIG module, but has it loaded this one? */ + iter=module_head; + do { + if (iter==&swig_module) { + /* Our module is already in the list, so there's nothing more to do. */ + return; + } + iter=iter->next; + } while (iter!= module_head); + + /* otherwise we must add our module into the list */ + swig_module.next = module_head->next; + module_head->next = &swig_module; + } + + /* When multiple interpreters are used, a module could have already been initialized in + a different interpreter, but not yet have a pointer in this interpreter. + In this case, we do not want to continue adding types... everything should be + set up already */ + if (init == 0) return; + + /* Now work on filling in swig_module.types */ +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: size %d\n", swig_module.size); +#endif + for (i = 0; i < swig_module.size; ++i) { + swig_type_info *type = 0; + swig_type_info *ret; + swig_cast_info *cast; + +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name); +#endif + + /* if there is another module already loaded */ + if (swig_module.next != &swig_module) { + type = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, swig_module.type_initial[i]->name); + } + if (type) { + /* Overwrite clientdata field */ +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: found type %s\n", type->name); +#endif + if (swig_module.type_initial[i]->clientdata) { + type->clientdata = swig_module.type_initial[i]->clientdata; +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: found and overwrite type %s \n", type->name); +#endif + } + } else { + type = swig_module.type_initial[i]; + } + + /* Insert casting types */ + cast = swig_module.cast_initial[i]; + while (cast->type) { + /* Don't need to add information already in the list */ + ret = 0; +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: look cast %s\n", cast->type->name); +#endif + if (swig_module.next != &swig_module) { + ret = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, cast->type->name); +#ifdef SWIGRUNTIME_DEBUG + if (ret) printf("SWIG_InitializeModule: found cast %s\n", ret->name); +#endif + } + if (ret) { + if (type == swig_module.type_initial[i]) { +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: skip old type %s\n", ret->name); +#endif + cast->type = ret; + ret = 0; + } else { + /* Check for casting already in the list */ + swig_cast_info *ocast = SWIG_TypeCheck(ret->name, type); +#ifdef SWIGRUNTIME_DEBUG + if (ocast) printf("SWIG_InitializeModule: skip old cast %s\n", ret->name); +#endif + if (!ocast) ret = 0; + } + } + + if (!ret) { +#ifdef SWIGRUNTIME_DEBUG + printf("SWIG_InitializeModule: adding cast %s\n", cast->type->name); +#endif + if (type->cast) { + type->cast->prev = cast; + cast->next = type->cast; + } + type->cast = cast; + } + cast++; + } + /* Set entry in modules->types array equal to the type */ + swig_module.types[i] = type; + } + swig_module.types[i] = 0; + +#ifdef SWIGRUNTIME_DEBUG + printf("**** SWIG_InitializeModule: Cast List ******\n"); + for (i = 0; i < swig_module.size; ++i) { + int j = 0; + swig_cast_info *cast = swig_module.cast_initial[i]; + printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name); + while (cast->type) { + printf("SWIG_InitializeModule: cast type %s\n", cast->type->name); + cast++; + ++j; + } + printf("---- Total casts: %d\n",j); + } + printf("**** SWIG_InitializeModule: Cast List ******\n"); +#endif +} + +/* This function will propagate the clientdata field of type to +* any new swig_type_info structures that have been added into the list +* of equivalent types. It is like calling +* SWIG_TypeClientData(type, clientdata) a second time. +*/ +SWIGRUNTIME void +SWIG_PropagateClientData(void) { + size_t i; + swig_cast_info *equiv; + static int init_run = 0; + + if (init_run) return; + init_run = 1; + + for (i = 0; i < swig_module.size; i++) { + if (swig_module.types[i]->clientdata) { + equiv = swig_module.types[i]->cast; + while (equiv) { + if (!equiv->converter) { + if (equiv->type && !equiv->type->clientdata) + SWIG_TypeClientData(equiv->type, swig_module.types[i]->clientdata); + } + equiv = equiv->next; + } + } + } +} + +#ifdef __cplusplus +#if 0 +{ + /* c-mode */ +#endif +} +#endif + + + +#ifdef __cplusplus +extern "C" { +#endif + + /* Python-specific SWIG API */ +#define SWIG_newvarlink() SWIG_Python_newvarlink() +#define SWIG_addvarlink(p, name, get_attr, set_attr) SWIG_Python_addvarlink(p, name, get_attr, set_attr) +#define SWIG_InstallConstants(d, constants) SWIG_Python_InstallConstants(d, constants) + + /* ----------------------------------------------------------------------------- + * global variable support code. + * ----------------------------------------------------------------------------- */ + + typedef struct swig_globalvar { + char *name; /* Name of global variable */ + PyObject *(*get_attr)(void); /* Return the current value */ + int (*set_attr)(PyObject *); /* Set the value */ + struct swig_globalvar *next; + } swig_globalvar; + + typedef struct swig_varlinkobject { + PyObject_HEAD + swig_globalvar *vars; + } swig_varlinkobject; + + SWIGINTERN PyObject * + swig_varlink_repr(swig_varlinkobject *SWIGUNUSEDPARM(v)) { +#if PY_VERSION_HEX >= 0x03000000 + return PyUnicode_InternFromString(""); +#else + return PyString_FromString(""); +#endif + } + + SWIGINTERN PyObject * + swig_varlink_str(swig_varlinkobject *v) { +#if PY_VERSION_HEX >= 0x03000000 + PyObject *str = PyUnicode_InternFromString("("); + PyObject *tail; + PyObject *joined; + swig_globalvar *var; + for (var = v->vars; var; var=var->next) { + tail = PyUnicode_FromString(var->name); + joined = PyUnicode_Concat(str, tail); + Py_DecRef(str); + Py_DecRef(tail); + str = joined; + if (var->next) { + tail = PyUnicode_InternFromString(", "); + joined = PyUnicode_Concat(str, tail); + Py_DecRef(str); + Py_DecRef(tail); + str = joined; + } + } + tail = PyUnicode_InternFromString(")"); + joined = PyUnicode_Concat(str, tail); + Py_DecRef(str); + Py_DecRef(tail); + str = joined; +#else + PyObject *str = PyString_FromString("("); + swig_globalvar *var; + for (var = v->vars; var; var=var->next) { + PyString_ConcatAndDel(&str,PyString_FromString(var->name)); + if (var->next) PyString_ConcatAndDel(&str,PyString_FromString(", ")); + } + PyString_ConcatAndDel(&str,PyString_FromString(")")); +#endif + return str; + } + + SWIGINTERN int + swig_varlink_print(swig_varlinkobject *v, FILE *fp, int SWIGUNUSEDPARM(flags)) { + char *tmp; + PyObject *str = swig_varlink_str(v); + fprintf(fp,"Swig global variables "); + fprintf(fp,"%s\n", tmp = SWIG_Python_str_AsChar(str)); + SWIG_Python_str_DelForPy3(tmp); + Py_DECREF(str); + return 0; + } + + SWIGINTERN void + swig_varlink_dealloc(swig_varlinkobject *v) { + swig_globalvar *var = v->vars; + while (var) { + swig_globalvar *n = var->next; + free(var->name); + free(var); + var = n; + } + } + + SWIGINTERN PyObject * + swig_varlink_getattr(swig_varlinkobject *v, char *n) { + PyObject *res = NULL; + swig_globalvar *var = v->vars; + while (var) { + if (strcmp(var->name,n) == 0) { + res = (*var->get_attr)(); + break; + } + var = var->next; + } + if (res == NULL && !PyErr_Occurred()) { + PyErr_Format(PyExc_AttributeError, "Unknown C global variable '%s'", n); + } + return res; + } + + SWIGINTERN int + swig_varlink_setattr(swig_varlinkobject *v, char *n, PyObject *p) { + int res = 1; + swig_globalvar *var = v->vars; + while (var) { + if (strcmp(var->name,n) == 0) { + res = (*var->set_attr)(p); + break; + } + var = var->next; + } + if (res == 1 && !PyErr_Occurred()) { + PyErr_Format(PyExc_AttributeError, "Unknown C global variable '%s'", n); + } + return res; + } + + SWIGINTERN PyTypeObject* + swig_varlink_type(void) { + static char varlink__doc__[] = "Swig var link object"; + static PyTypeObject varlink_type; + static int type_init = 0; + if (!type_init) { + const PyTypeObject tmp = { +#if PY_VERSION_HEX >= 0x03000000 + PyVarObject_HEAD_INIT(NULL, 0) +#else + PyObject_HEAD_INIT(NULL) + 0, /* ob_size */ +#endif + (char *)"swigvarlink", /* tp_name */ + sizeof(swig_varlinkobject), /* tp_basicsize */ + 0, /* tp_itemsize */ + (destructor) swig_varlink_dealloc, /* tp_dealloc */ + (printfunc) swig_varlink_print, /* tp_print */ + (getattrfunc) swig_varlink_getattr, /* tp_getattr */ + (setattrfunc) swig_varlink_setattr, /* tp_setattr */ + 0, /* tp_compare */ + (reprfunc) swig_varlink_repr, /* tp_repr */ + 0, /* tp_as_number */ + 0, /* tp_as_sequence */ + 0, /* tp_as_mapping */ + 0, /* tp_hash */ + 0, /* tp_call */ + (reprfunc) swig_varlink_str, /* tp_str */ + 0, /* tp_getattro */ + 0, /* tp_setattro */ + 0, /* tp_as_buffer */ + 0, /* tp_flags */ + varlink__doc__, /* tp_doc */ + 0, /* tp_traverse */ + 0, /* tp_clear */ + 0, /* tp_richcompare */ + 0, /* tp_weaklistoffset */ +#if PY_VERSION_HEX >= 0x02020000 + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0, /* tp_iter -> tp_weaklist */ +#endif +#if PY_VERSION_HEX >= 0x02030000 + 0, /* tp_del */ +#endif +#if PY_VERSION_HEX >= 0x02060000 + 0, /* tp_version_tag */ +#endif +#if PY_VERSION_HEX >= 0x03040000 + 0, /* tp_finalize */ +#endif +#ifdef COUNT_ALLOCS + 0, /* tp_allocs */ + 0, /* tp_frees */ + 0, /* tp_maxalloc */ +#if PY_VERSION_HEX >= 0x02050000 + 0, /* tp_prev */ +#endif + 0 /* tp_next */ +#endif + }; + varlink_type = tmp; + type_init = 1; +#if PY_VERSION_HEX < 0x02020000 + varlink_type.ob_type = &PyType_Type; +#else + if (PyType_Ready(&varlink_type) < 0) + return NULL; +#endif + } + return &varlink_type; + } + + /* Create a variable linking object for use later */ + SWIGINTERN PyObject * + SWIG_Python_newvarlink(void) { + swig_varlinkobject *result = PyObject_NEW(swig_varlinkobject, swig_varlink_type()); + if (result) { + result->vars = 0; + } + return ((PyObject*) result); + } + + SWIGINTERN void + SWIG_Python_addvarlink(PyObject *p, char *name, PyObject *(*get_attr)(void), int (*set_attr)(PyObject *p)) { + swig_varlinkobject *v = (swig_varlinkobject *) p; + swig_globalvar *gv = (swig_globalvar *) malloc(sizeof(swig_globalvar)); + if (gv) { + size_t size = strlen(name)+1; + gv->name = (char *)malloc(size); + if (gv->name) { + strncpy(gv->name,name,size); + gv->get_attr = get_attr; + gv->set_attr = set_attr; + gv->next = v->vars; + } + } + v->vars = gv; + } + + SWIGINTERN PyObject * + SWIG_globals(void) { + static PyObject *_SWIG_globals = 0; + if (!_SWIG_globals) _SWIG_globals = SWIG_newvarlink(); + return _SWIG_globals; + } + + /* ----------------------------------------------------------------------------- + * constants/methods manipulation + * ----------------------------------------------------------------------------- */ + + /* Install Constants */ + SWIGINTERN void + SWIG_Python_InstallConstants(PyObject *d, swig_const_info constants[]) { + PyObject *obj = 0; + size_t i; + for (i = 0; constants[i].type; ++i) { + switch(constants[i].type) { + case SWIG_PY_POINTER: + obj = SWIG_InternalNewPointerObj(constants[i].pvalue, *(constants[i]).ptype,0); + break; + case SWIG_PY_BINARY: + obj = SWIG_NewPackedObj(constants[i].pvalue, constants[i].lvalue, *(constants[i].ptype)); + break; + default: + obj = 0; + break; + } + if (obj) { + PyDict_SetItemString(d, constants[i].name, obj); + Py_DECREF(obj); + } + } + } + + /* -----------------------------------------------------------------------------*/ + /* Fix SwigMethods to carry the callback ptrs when needed */ + /* -----------------------------------------------------------------------------*/ + + SWIGINTERN void + SWIG_Python_FixMethods(PyMethodDef *methods, + swig_const_info *const_table, + swig_type_info **types, + swig_type_info **types_initial) { + size_t i; + for (i = 0; methods[i].ml_name; ++i) { + const char *c = methods[i].ml_doc; + if (!c) continue; + c = strstr(c, "swig_ptr: "); + if (c) { + int j; + swig_const_info *ci = 0; + const char *name = c + 10; + for (j = 0; const_table[j].type; ++j) { + if (strncmp(const_table[j].name, name, + strlen(const_table[j].name)) == 0) { + ci = &(const_table[j]); + break; + } + } + if (ci) { + void *ptr = (ci->type == SWIG_PY_POINTER) ? ci->pvalue : 0; + if (ptr) { + size_t shift = (ci->ptype) - types; + swig_type_info *ty = types_initial[shift]; + size_t ldoc = (c - methods[i].ml_doc); + size_t lptr = strlen(ty->name)+2*sizeof(void*)+2; + char *ndoc = (char*)malloc(ldoc + lptr + 10); + if (ndoc) { + char *buff = ndoc; + strncpy(buff, methods[i].ml_doc, ldoc); + buff += ldoc; + strncpy(buff, "swig_ptr: ", 10); + buff += 10; + SWIG_PackVoidPtr(buff, ptr, ty->name, lptr); + methods[i].ml_doc = ndoc; + } + } + } + } + } + } + +#ifdef __cplusplus +} +#endif + +/* -----------------------------------------------------------------------------* + * Partial Init method + * -----------------------------------------------------------------------------*/ + +#ifdef __cplusplus +extern "C" +#endif + +SWIGEXPORT +#if PY_VERSION_HEX >= 0x03000000 +PyObject* +#else +void +#endif +SWIG_init(void) { + PyObject *m, *d, *md; +#if PY_VERSION_HEX >= 0x03000000 + static struct PyModuleDef SWIG_module = { +# if PY_VERSION_HEX >= 0x03020000 + PyModuleDef_HEAD_INIT, +# else + { + PyObject_HEAD_INIT(NULL) + NULL, /* m_init */ + 0, /* m_index */ + NULL, /* m_copy */ + }, +# endif + (char *) SWIG_name, + NULL, + -1, + SwigMethods, + NULL, + NULL, + NULL, + NULL + }; +#endif + +#if defined(SWIGPYTHON_BUILTIN) + static SwigPyClientData SwigPyObject_clientdata = { + 0, 0, 0, 0, 0, 0, 0 + }; + static PyGetSetDef this_getset_def = { + (char *)"this", &SwigPyBuiltin_ThisClosure, NULL, NULL, NULL + }; + static SwigPyGetSet thisown_getset_closure = { + (PyCFunction) SwigPyObject_own, + (PyCFunction) SwigPyObject_own + }; + static PyGetSetDef thisown_getset_def = { + (char *)"thisown", SwigPyBuiltin_GetterClosure, SwigPyBuiltin_SetterClosure, NULL, &thisown_getset_closure + }; + PyTypeObject *builtin_pytype; + int builtin_base_count; + swig_type_info *builtin_basetype; + PyObject *tuple; + PyGetSetDescrObject *static_getset; + PyTypeObject *metatype; + PyTypeObject *swigpyobject; + SwigPyClientData *cd; + PyObject *public_interface, *public_symbol; + PyObject *this_descr; + PyObject *thisown_descr; + PyObject *self = 0; + int i; + + (void)builtin_pytype; + (void)builtin_base_count; + (void)builtin_basetype; + (void)tuple; + (void)static_getset; + (void)self; + + /* Metaclass is used to implement static member variables */ + metatype = SwigPyObjectType(); + assert(metatype); +#endif + + /* Fix SwigMethods to carry the callback ptrs when needed */ + SWIG_Python_FixMethods(SwigMethods, swig_const_table, swig_types, swig_type_initial); + +#if PY_VERSION_HEX >= 0x03000000 + m = PyModule_Create(&SWIG_module); +#else + m = Py_InitModule((char *) SWIG_name, SwigMethods); +#endif + + md = d = PyModule_GetDict(m); + (void)md; + + SWIG_InitializeModule(0); + +#ifdef SWIGPYTHON_BUILTIN + swigpyobject = SwigPyObject_TypeOnce(); + + SwigPyObject_stype = SWIG_MangledTypeQuery("_p_SwigPyObject"); + assert(SwigPyObject_stype); + cd = (SwigPyClientData*) SwigPyObject_stype->clientdata; + if (!cd) { + SwigPyObject_stype->clientdata = &SwigPyObject_clientdata; + SwigPyObject_clientdata.pytype = swigpyobject; + } else if (swigpyobject->tp_basicsize != cd->pytype->tp_basicsize) { + PyErr_SetString(PyExc_RuntimeError, "Import error: attempted to load two incompatible swig-generated modules."); +# if PY_VERSION_HEX >= 0x03000000 + return NULL; +# else + return; +# endif + } + + /* All objects have a 'this' attribute */ + this_descr = PyDescr_NewGetSet(SwigPyObject_type(), &this_getset_def); + (void)this_descr; + + /* All objects have a 'thisown' attribute */ + thisown_descr = PyDescr_NewGetSet(SwigPyObject_type(), &thisown_getset_def); + (void)thisown_descr; + + public_interface = PyList_New(0); + public_symbol = 0; + (void)public_symbol; + + PyDict_SetItemString(md, "__all__", public_interface); + Py_DECREF(public_interface); + for (i = 0; SwigMethods[i].ml_name != NULL; ++i) + SwigPyBuiltin_AddPublicSymbol(public_interface, SwigMethods[i].ml_name); + for (i = 0; swig_const_table[i].name != 0; ++i) + SwigPyBuiltin_AddPublicSymbol(public_interface, swig_const_table[i].name); +#endif + + SWIG_InstallConstants(d,swig_const_table); + + + Py_Initialize(); + import_array(); + +#if PY_VERSION_HEX >= 0x03000000 + return m; +#else + return; +#endif +} + diff --git a/pymolfile/molfile/pymolfile.cxx b/pymolfile/molfile/pymolfile.cxx new file mode 100644 index 0000000..51eda58 --- /dev/null +++ b/pymolfile/molfile/pymolfile.cxx @@ -0,0 +1,740 @@ +/* Hey emacs this is -*- C -*- and this is my editor vim. + * + * pymolfile.c : C and Python interfaces for molfile_plugins + * Copyright (c) Berk Onat 2017 + * + * This program is under UIUC Open Source License please see LICENSE file + */ + +/* + * The code is written following the plugin test + * context of main.c in molfile_plugin/src/ + */ + +/* Get HAVE_CONFIG_H */ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include + +/* get fixed-width types if we are using ANSI C99 */ +#ifdef HAVE_STDINT_H +# include +#elif (defined HAVE_INTTYPES_H) +# include +#endif + +#include "pymolfile.h" + +int numplugins=0; +molfile_plugin_t** plugin_list; + +#if PY_VERSION_HEX >= 0x03000000 +#define PyInt_AsLong PyLong_AsLong +#define PyString_FromString PyBytes_FromString +#define PyInt_FromLong PyLong_FromLong + +void del_molfile_plugin_list(PyObject* molcapsule) +{ + plugin_list = (molfile_plugin_t**) PyMolfileCapsule_AsVoidPtr(molcapsule); + free(plugin_list); + Py_XDECREF(molcapsule); +} +void del_molfile_file_handle(PyObject* molcapsule) +{ + void *file_handle = (void*) PyMolfileCapsule_AsVoidPtr(molcapsule); + free(file_handle); + Py_XDECREF(molcapsule); +} +#else +void del_molfile_plugin_list(void* molcapsule) +{ + plugin_list = (molfile_plugin_t**) PyMolfileCapsule_AsVoidPtr((PyObject*)molcapsule); + free(plugin_list); + Py_XDECREF(molcapsule); +} +void del_molfile_file_handle(void* molcapsule) +{ + void *file_handle = PyMolfileCapsule_AsVoidPtr((PyObject*)molcapsule); + free(file_handle); + Py_XDECREF(molcapsule); +} +#endif + +/* * * * * * * * * * * * * * * * * * * * * * * + * Helper functions to set and store plugins * + * * * * * * * * * * * * * * * * * * * * * * */ + +PyObject* get_plugin(PyObject* molcapsule, int plug_no) +{ + molfile_plugin_t* plugin; + molfile_plugin_t** plug_list = (molfile_plugin_t**) PyMolfileCapsule_AsVoidPtr(molcapsule); + if(plug_no < 0){ + plugin = NULL; + } else { + if(plug_list != NULL){ + plugin = plug_list[plug_no]; + } else { + plugin = NULL; + } + } + return (PyObject*) PyMolfileCapsule_FromVoidPtr((void *)plugin, NULL); +} + +/* * * * * * * * * * * * * * * * * * * * * * * * * * * + * Interface functions to initialize molfile plugins * + * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* check validity of plugins and register them. */ +static int molfile_register(void*, vmdplugin_t *plugin) { + if (!plugin->type || !plugin->name || !plugin->author) { + // skipping plugin with incomplete header + return VMDPLUGIN_ERROR; + } + else if (plugin->abiversion != vmdplugin_ABIVERSION) { + // skipping plugin with incompatible ABI + return VMDPLUGIN_ERROR; + } + else if (0 != strncmp(plugin->type, "mol file", 8)) { + // skipping plugin of incompatible type + return VMDPLUGIN_ERROR; + } + else if (numplugins >= MAXPLUGINS) { + // too many plugins: increase MAXPLUGINS + return VMDPLUGIN_ERROR; + } + + plugin_list[numplugins] = (molfile_plugin_t *) plugin; + ++numplugins; + return VMDPLUGIN_SUCCESS; +} + +PyObject* molfile_plugin_list(int maxsize) +{ + if(maxsize < MAXPLUGINS){ + maxsize = MAXPLUGINS; + } + plugin_list = (molfile_plugin_t**) malloc(sizeof(molfile_plugin_t*)*maxsize); + return PyMolfileCapsule_FromVoidPtr((void *)plugin_list, del_molfile_plugin_list); +} + +/* register all available plugins and clear handles. */ +int molfile_init(void) +{ + MOLFILE_INIT_ALL; + MOLFILE_REGISTER_ALL(NULL,molfile_register); + return numplugins; +} + +/* unregister all available plugins */ +int molfile_finish(void) +{ + MOLFILE_FINI_ALL; + return 0; +} + +/* * * * * * * * * * * * * * * * * * * * * * * + * Wrappers to directly access molfile plugin* + * functions and settings * + * * * * * * * * * * * * * * * * * * * * * * */ + +/* molfile_plugin_t access */ + +/* Functions in molfile_plugin_t */ + +PyObject * molfile_plugin_info(PyObject* molcapsule, int plugin_no) { + molfile_plugin_t *plugin; + molfile_plugin_t** plugin_list = (molfile_plugin_t**) PyMolfileCapsule_AsVoidPtr(molcapsule); + int *plugno = &plugin_no; + int has_readstructure = 0; + int has_readbonds = 0; + int has_readangles = 0; + int has_writestructure = 0; + int has_writebonds = 0; + int has_writeangles = 0; + int has_readnexttimestep = 0; + int has_writetimestep = 0; + int plugin_list_size = sizeof(plugin_list) / sizeof(molfile_plugin_t**); + if (plugno==NULL || plugin_no<0){ + PyErr_Format(PyExc_IOError, "Error: molfile plugin handle no should be given, be positive value and should not exceed the list length'%d'. You set '%d'", plugin_list_size, plugin_no); + return 0; + } + plugin = plugin_list[plugin_no]; + if(plugin==NULL || !plugin->open_file_read){ + PyErr_Format(PyExc_IOError, "Error: molfile plugin '%d' is not initialized.", plugin_no); + return 0; + } + if (plugin->read_structure) has_readstructure = 1; + if (plugin->read_bonds) has_readbonds = 1; + if (plugin->read_angles) has_readangles = 1; + if (plugin->read_next_timestep) has_readnexttimestep = 1; + if (plugin->write_structure) has_writestructure = 1; + if (plugin->write_bonds) has_writebonds = 1; + if (plugin->write_angles) has_writeangles = 1; + if (plugin->write_timestep) has_writetimestep = 1; + PyObject *tuple = PyTuple_New(17); + PyTuple_SET_ITEM(tuple, 0, PyString_FromString(plugin->filename_extension)); + PyTuple_SET_ITEM(tuple, 1, PyString_FromString(plugin->name)); + PyTuple_SET_ITEM(tuple, 2, PyInt_FromLong((long)has_readstructure)); + PyTuple_SET_ITEM(tuple, 3, PyInt_FromLong((long)has_readbonds)); + PyTuple_SET_ITEM(tuple, 4, PyInt_FromLong((long)has_readangles)); + PyTuple_SET_ITEM(tuple, 5, PyInt_FromLong((long)has_readnexttimestep)); + PyTuple_SET_ITEM(tuple, 6, PyInt_FromLong((long)has_writestructure)); + PyTuple_SET_ITEM(tuple, 7, PyInt_FromLong((long)has_writebonds)); + PyTuple_SET_ITEM(tuple, 8, PyInt_FromLong((long)has_writeangles)); + PyTuple_SET_ITEM(tuple, 9, PyInt_FromLong((long)has_writetimestep)); + PyTuple_SET_ITEM(tuple, 10, PyString_FromString(plugin->prettyname)); + PyTuple_SET_ITEM(tuple, 11, PyString_FromString(plugin->type)); + PyTuple_SET_ITEM(tuple, 12, PyString_FromString(plugin->author)); + PyTuple_SET_ITEM(tuple, 13, PyInt_FromLong((long)plugin->majorv)); + PyTuple_SET_ITEM(tuple, 14, PyInt_FromLong((long)plugin->minorv)); + PyTuple_SET_ITEM(tuple, 15, PyInt_FromLong((long)plugin->abiversion)); + PyTuple_SET_ITEM(tuple, 16, PyInt_FromLong((long)plugin->is_reentrant)); + return tuple; +} + +PyObject* read_fill_structure(PyObject* molpack, PyObject* prototype) +{ + //Py_Initialize(); + //import_array(); + int options = 0; + molfile_plugin_t* plugin; + void* file_handle; + molfile_atom_t* data; + int numatoms, status; + int nd; + PyObject *ret = NULL; + // Access plugin_handle values + MolObject* plugin_handle = (MolObject*) molpack; + if (plugin_handle->plugin) { + plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle->plugin); + //plugin = plugin_handle->plugin; + } else { + PyErr_Format(PyExc_IOError, "molfile plugin is not active."); + return NULL; + } + if (plugin_handle->file_handle) { + file_handle = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle->file_handle); + //file_handle = plugin_handle->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in molfile plugin handle."); + return NULL; + } + if (plugin_handle->natoms) { + numatoms = plugin_handle->natoms; + } else { + PyErr_Format(PyExc_IOError, "no assigned number of atoms in molfile plugin handle."); + return NULL; + } + // Allocate memory for array of molfile_atom_t struct + data = (molfile_atom_t *)calloc(numatoms,sizeof(molfile_atom_t)); + // Get array values in molfile_atom_t + if (plugin->read_structure) { + status = plugin->read_structure(file_handle, &options, data); + // Check if the plugin returns the results + if (status!=0){ + PyErr_Format(PyExc_IOError, "Error accessing molfile_atom_t in read_structure function of plugin."); + return NULL; + } + if(numatoms>0){ + nd = 1; + npy_intp dims[1] = { numatoms }; + npy_intp strides[1] = { sizeof(molfile_atom_t) }; + Py_INCREF(prototype); + ret = PyArray_NewFromDescr(Py_TYPE(prototype), PyArray_DESCR((PyArrayObject*)prototype), + nd, dims, + strides, data, + PyArray_FLAGS((PyArrayObject*)prototype), prototype); + Py_DECREF(prototype); + return (PyObject*) ret; + } else { + PyErr_Format(PyExc_AttributeError, "plugin read_structure does not have atoms information."); + Py_RETURN_NONE; + } + } else { + PyErr_Format(PyExc_AttributeError, "molfile plugin does not have read_structure function."); + Py_RETURN_NONE; + } +} + +PyObject* read_fill_bonds(PyObject* molpack) +{ + import_array(); + int options = 0; + molfile_plugin_t* plugin; + void* file_handle; + molfile_atom_t* data; + int numatoms, status; + int nd; + PyObject *ret = NULL; + // Access plugin_handle values + MolObject* plugin_handle = (MolObject*) molpack; + if (plugin_handle->plugin) { + plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle->plugin); + //plugin = plugin_handle->plugin; + } else { + PyErr_Format(PyExc_IOError, "molfile plugin is not active."); + return NULL; + } + if (plugin_handle->file_handle) { + file_handle = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle->file_handle); + //file_handle = plugin_handle->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in molfile plugin handle."); + return NULL; + } + numatoms = plugin_handle->natoms; + if (plugin->read_bonds) { + int nbonds, *from, *to, *bondtype, nbondtypes; + float *bondorder; + char **bondtypename; + if ((status = plugin->read_bonds(file_handle, &nbonds, &from, &to, + &bondorder, &bondtype, &nbondtypes, &bondtypename))) { + PyErr_Format(PyExc_IOError, "Error accessing read_bonds function of plugin."); + return NULL; + } + PyArrayInterface *inter = NULL; + inter = (PyArrayInterface*)malloc(sizeof(PyArrayInterface)); + if (inter==NULL) + return PyErr_NoMemory(); + inter->flags = NPY_ARRAY_NOTSWAPPED | NPY_ARRAY_ALIGNED | NPY_ARRAY_WRITEABLE; + ret = PyDict_New(); + nd = 1; + npy_intp istrides[1] = { NPY_SIZEOF_INT }; + npy_intp fstrides[1] = { NPY_SIZEOF_FLOAT }; + npy_intp cstrides[1] = { sizeof(NPY_STRING) }; + if (nbonds>0) { + PyObject *from_arr = NULL; + PyObject *to_arr = NULL; + npy_intp dims[1] = { nbonds }; + from_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, dims, + istrides, from, + inter->flags, NULL); + PyDict_SetItemString(ret, "from", from_arr); + to_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, dims, + istrides, to, + inter->flags, NULL); + PyDict_SetItemString(ret, "to", to_arr); + if (bondorder!=NULL) { + PyObject *bondorder_arr = NULL; + bondorder_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_FLOAT), + nd, dims, + fstrides, bondorder, + inter->flags, NULL); + PyDict_SetItemString(ret, "bondorder", bondorder_arr); + } + if (bondtype!=NULL && nbondtypes>0) { + PyObject *bondtype_arr = NULL; + bondtype_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, dims, + istrides, bondtype, + inter->flags, NULL); + PyDict_SetItemString(ret, "bondtype", bondtype_arr); + } + if (bondtypename!=NULL && nbondtypes>0) { + PyObject *bondtypename_arr = NULL; + npy_intp cdims[1] = { nbondtypes }; + bondtypename_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_STRING), + nd, cdims, + cstrides, bondtypename, + inter->flags, NULL); + PyDict_SetItemString(ret, "bondtypename", bondtypename_arr); + } + return (PyObject*) ret; + } else { + Py_RETURN_NONE; + } + } else { + PyErr_Format(PyExc_AttributeError, "molfile plugin does not have read_bonds function."); + Py_RETURN_NONE; + } +} + +PyObject* read_fill_angles(PyObject* molpack) +{ + import_array(); + int options = 0; + molfile_plugin_t* plugin; + void* file_handle; + molfile_atom_t* data; + int numatoms, status; + int nd; + int nodata = 0; + PyObject *ret = NULL; + // Access plugin_handle values + MolObject* plugin_handle = (MolObject*) molpack; + if (plugin_handle->plugin) { + plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle->plugin); + //plugin = plugin_handle->plugin; + } else { + PyErr_Format(PyExc_IOError, "molfile plugin is not active."); + return NULL; + } + if (plugin_handle->file_handle) { + file_handle = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle->file_handle); + //file_handle = plugin_handle->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in molfile plugin handle."); + return NULL; + } + numatoms = plugin_handle->natoms; + // Check if there is read_angles support in this plugin + if (plugin->read_angles) { + // Angles + int numangles; + int *angles = NULL; + int *angletypes = NULL; + int numangletypes; + char **angletypenames = NULL; + // Dihedrals + int numdihedrals; + int *dihedrals = NULL; + int *dihedraltypes = NULL; + int numdihedraltypes; + char **dihedraltypenames = NULL; + // Impropers + int numimpropers; + int *impropers = NULL; + int *impropertypes = NULL; + int numimpropertypes; + char **impropertypenames = NULL; + // Cterms + int numcterms, ctermcols, ctermrows; + int *cterms = NULL; + // Initilize zeros to number of angles, dihedrals, so on ... + numangles = 0; + numangletypes = 0; + numdihedrals = 0; + numdihedraltypes = 0; + numimpropers = 0; + numimpropertypes = 0; + numcterms = 0; + // Calling read_angles to gather the information + if ((status = plugin->read_angles(file_handle, &numangles, &angles, &angletypes, + &numangletypes, &angletypenames, &numdihedrals, + &dihedrals, &dihedraltypes, &numdihedraltypes, + &dihedraltypenames, &numimpropers, &impropers, + &impropertypes, &numimpropertypes, &impropertypenames, + &numcterms, &cterms, &ctermcols, &ctermrows))) { + PyErr_Format(PyExc_IOError, "Error accessing read_angles function of plugin."); + return NULL; + } + PyArrayInterface *inter = NULL; + inter = (PyArrayInterface*)malloc(sizeof(PyArrayInterface)); + if (inter==NULL) + return PyErr_NoMemory(); + inter->flags = NPY_ARRAY_NOTSWAPPED | NPY_ARRAY_ALIGNED | NPY_ARRAY_WRITEABLE; + ret = PyDict_New(); + nd = 1; + npy_intp istrides[1] = { NPY_SIZEOF_INT }; + npy_intp sstrides[1] = { sizeof(NPY_STRING) }; + if (numangles>0 && angles!=NULL) { + nodata = 1; + PyObject *angles_arr = NULL; + npy_intp adims[1] = { numangles }; + angles_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, adims, + istrides, angles, + inter->flags, NULL); + PyDict_SetItemString(ret, "angles", angles_arr); + if (angletypes!=NULL) { + PyObject *angletypes_arr = NULL; + angletypes_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, adims, + istrides, angletypes, + inter->flags, NULL); + PyDict_SetItemString(ret, "angletypes", angletypes_arr); + } + } + if (numangletypes>0 && angletypenames!=NULL) { + nodata = 1; + PyObject *angletypenames_arr = NULL; + npy_intp atdims[1] = { numangletypes }; + angletypenames_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_STRING), + nd, atdims, + sstrides, angletypenames, + inter->flags, NULL); + PyDict_SetItemString(ret, "angletypenames", angletypenames_arr); + } + if (numdihedrals>0 && dihedrals!=NULL) { + nodata = 1; + PyObject *dihedrals_arr = NULL; + npy_intp ddims[1] = { numdihedrals }; + dihedrals_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, ddims, + istrides, dihedrals, + inter->flags, NULL); + PyDict_SetItemString(ret, "dihedrals", dihedrals_arr); + if (dihedraltypes!=NULL) { + PyObject *dihedraltypes_arr = NULL; + dihedraltypes_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, ddims, + istrides, dihedraltypes, + inter->flags, NULL); + PyDict_SetItemString(ret, "dihedraltypes", dihedraltypes_arr); + } + } + if (numdihedraltypes>0 && dihedraltypenames!=NULL) { + PyObject *dihedraltypenames_arr = NULL; + npy_intp dtdims[1] = { numdihedraltypes }; + dihedraltypenames_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_STRING), + nd, dtdims, + sstrides, dihedraltypenames, + inter->flags, NULL); + PyDict_SetItemString(ret, "dihedraltypenames", dihedraltypenames_arr); + } + if (numimpropers>0 && impropers!=NULL) { + nodata = 1; + PyObject *impropers_arr = NULL; + npy_intp idims[1] = { numimpropers }; + impropers_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, idims, + istrides, impropers, + inter->flags, NULL); + PyDict_SetItemString(ret, "impropers", impropers_arr); + if (impropertypes!=NULL) { + PyObject *impropertypes_arr = NULL; + impropertypes_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + nd, idims, + istrides, impropertypes, + inter->flags, NULL); + PyDict_SetItemString(ret, "impropertypes", impropertypes_arr); + } + } + if (numimpropertypes>0 && impropertypenames!=NULL) { + PyObject *impropertypenames_arr = NULL; + npy_intp itdims[1] = { numimpropertypes }; + impropertypenames_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_STRING), + nd, itdims, + sstrides, impropertypenames, + inter->flags, NULL); + PyDict_SetItemString(ret, "impropertypenames", impropertypenames_arr); + } + if (numcterms>0 && cterms!=NULL) { + nodata = 1; + int ctermnd; + npy_intp *ctermdims; + npy_intp *ctermstrides; + PyObject *cterms_arr = NULL; + if (ctermrows>0 || ctermcols>0) { + ctermnd = 2; + ctermdims = (npy_intp*)calloc(ctermnd,sizeof(int)); + ctermstrides = (npy_intp*)calloc(ctermnd,sizeof(int)); + ctermdims[0] = ctermrows; + ctermdims[1] = ctermcols; + ctermstrides[0] = NPY_SIZEOF_INT; + ctermstrides[1] = ctermcols*NPY_SIZEOF_INT; + } else { + ctermnd = 1; + ctermdims = (npy_intp*)calloc(ctermnd,sizeof(int)); + ctermstrides = (npy_intp*)calloc(ctermnd,sizeof(int)); + ctermdims[0] = 8*numcterms; + ctermstrides[0] = NPY_SIZEOF_INT; + } + cterms_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_INT), + ctermnd, ctermdims, + ctermstrides, cterms, + inter->flags, NULL); + PyDict_SetItemString(ret, "cterms", cterms_arr); + } + if (nodata>0) { + return (PyObject*) ret; + } else { + Py_RETURN_NONE; + } + } else { + PyErr_Format(PyExc_AttributeError, "molfile plugin does not have read_angles function."); + Py_RETURN_NONE; + } +} + + +PyObject* read_fill_next_timestep(PyObject* molpack) +{ + import_array(); + molfile_plugin_t* plugin; + void* file_handle; + int numatoms, status; + int nd; + int i, d; + PyObject *ret = NULL; + // Access plugin_handle values + MolObject* plugin_handle = (MolObject*) molpack; + if (plugin_handle->plugin) { + plugin = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle->plugin); + //plugin = plugin_handle->plugin; + } else { + PyErr_Format(PyExc_IOError, "molfile plugin is not active."); + return NULL; + } + if (plugin_handle->file_handle) { + file_handle = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle->file_handle); + //file_handle = plugin_handle->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in molfile plugin handle."); + return NULL; + } + if (plugin_handle->natoms) { + numatoms = plugin_handle->natoms; + } else { + PyErr_Format(PyExc_IOError, "no assigned number of atoms in molfile plugin handle."); + return NULL; + } + if (plugin->read_next_timestep) { + PyArrayInterface *inter = NULL; + inter = (PyArrayInterface*)malloc(sizeof(PyArrayInterface)); + if (inter==NULL) + return PyErr_NoMemory(); + inter->flags = NPY_ARRAY_NOTSWAPPED | NPY_ARRAY_ALIGNED | NPY_ARRAY_WRITEABLE; + ret = PyDict_New(); + molfile_timestep_t timestep; + // Check if the velocities will be supplied from this plugin + int has_velocities = -1; + unsigned int total_steps = 0; + unsigned int bytes_per_step = 0; + molfile_timestep_metadata_t timestep_metadata; + if (plugin->read_timestep_metadata) { + plugin->read_timestep_metadata(file_handle, ×tep_metadata); + total_steps = timestep_metadata.count; + has_velocities = timestep_metadata.has_velocities; + bytes_per_step = timestep_metadata.avg_bytes_per_timestep; + } else { + total_steps = 0; + has_velocities = -2; + } + timestep.A=-1; + timestep.B=-1; + timestep.C=-1; + timestep.alpha=-1; + timestep.beta=-1; + timestep.gamma=-1; + timestep.physical_time=-1; + timestep.coords = (float *)malloc(3*numatoms*sizeof(float)); + if(has_velocities == -2 || has_velocities == 1) { + timestep.velocities = (float *)malloc(3*numatoms*sizeof(float)); + for(i=0;iread_next_timestep(file_handle, numatoms, ×tep); + if (status == MOLFILE_EOF) { + Py_RETURN_NONE; + } + else if (status != MOLFILE_SUCCESS) { + PyErr_Format(PyExc_AttributeError, "Failed in calling read_next_timestep function of plugin."); + Py_RETURN_NONE; + } + else { + nd = 2; + PyObject *coords_arr = NULL; + npy_intp dims[2] = { numatoms, 3 }; + npy_intp strides[2] = { 3*sizeof(float), sizeof(float) }; + coords_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_FLOAT), + nd, dims, + strides, timestep.coords, + inter->flags, NULL); + PyDict_SetItemString(ret, "coords", coords_arr); + if (timestep.velocities!=NULL && (has_velocities == -2 || has_velocities == 1)) { + if (-1111 != (int)timestep.velocities[0] && + -2222 != (int)timestep.velocities[1] && + -3333 != (int)timestep.velocities[2]) { + PyObject *velocities_arr = NULL; + velocities_arr = PyArray_NewFromDescr(&PyArray_Type, PyArray_DescrFromType(NPY_FLOAT), + nd, dims, + strides, timestep.velocities, + inter->flags, NULL); + PyDict_SetItemString(ret, "velocities", velocities_arr); + } + } else { + if(has_velocities == -2 || has_velocities == 1) + free(timestep.velocities); + } + if(timestep.A > -1) + PyDict_SetItemString(ret, "A", PyFloat_FromDouble((double)timestep.A)); + if(timestep.B > -1) + PyDict_SetItemString(ret, "B", PyFloat_FromDouble((double)timestep.B)); + if(timestep.C > -1) + PyDict_SetItemString(ret, "C", PyFloat_FromDouble((double)timestep.C)); + if(timestep.alpha > -1) + PyDict_SetItemString(ret, "alpha", PyFloat_FromDouble((double)timestep.alpha)); + if(timestep.beta > -1) + PyDict_SetItemString(ret, "beta", PyFloat_FromDouble((double)timestep.beta)); + if(timestep.gamma > -1) + PyDict_SetItemString(ret, "gamma", PyFloat_FromDouble((double)timestep.gamma)); + if(timestep.physical_time > -1) + PyDict_SetItemString(ret, "physical_time", PyFloat_FromDouble(timestep.physical_time)); + //if(has_velocities > -1) + // PyDict_SetItemString(ret, "has_velocities", PyLong_FromLong((long)has_velocities)); + if(total_steps > -1) + PyDict_SetItemString(ret, "total_steps", PyLong_FromLong((long)total_steps)); + PyDict_SetItemString(ret, "has_velocities", PyLong_FromLong((long)has_velocities)); + return (PyObject*) ret; + } + } else { + PyErr_Format(PyExc_AttributeError, "molfile plugin does not have read_next_timestep function."); + Py_RETURN_NONE; + } +} + +PyObject* are_plugins_same(PyObject* molpack_a, PyObject* molpack_b) +{ + molfile_plugin_t* plugin_a; + molfile_plugin_t* plugin_b; + PyObject *ret = NULL; + MolObject* plugin_handle_a = (MolObject*) molpack_a; + MolObject* plugin_handle_b = (MolObject*) molpack_b; + if (plugin_handle_a->plugin) { + plugin_a = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle_a->plugin); + //plugin_a = plugin_handle_a->plugin; + } else { + PyErr_Format(PyExc_IOError, "Arg 1 of the molfile plugin is not active."); + return NULL; + } + if (plugin_handle_b->plugin) { + plugin_b = (molfile_plugin_t*) PyMolfileCapsule_AsVoidPtr(plugin_handle_b->plugin); + //plugin_b = plugin_handle_b->plugin; + } else { + PyErr_Format(PyExc_IOError, "Arg 2 of the molfile plugin is not active."); + return NULL; + } + if(plugin_a == plugin_b){ + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } +} + +PyObject* are_filehandles_same(PyObject* molpack_a, PyObject* molpack_b) +{ + MolObject* plugin_handle_a = (MolObject*) molpack_a; + MolObject* plugin_handle_b = (MolObject*) molpack_b; + void* file_handle_a; + void* file_handle_b; + if (plugin_handle_a->file_handle) { + file_handle_a = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle_a->file_handle); + //file_handle_a = plugin_handle_a->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in arg 1 of molfile plugin."); + return NULL; + } + if (plugin_handle_b->file_handle) { + file_handle_b = (void*) PyMolfileCapsule_AsVoidPtr(plugin_handle_b->file_handle); + //file_handle_b = plugin_handle_b->file_handle; + } else { + PyErr_Format(PyExc_IOError, "no file handle in arg 2 of molfile plugin."); + return NULL; + } + if(file_handle_a == file_handle_b){ + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } +} + diff --git a/pymolfile/molfile/pymolfile.h b/pymolfile/molfile/pymolfile.h index a9fdd15..97019a9 100644 --- a/pymolfile/molfile/pymolfile.h +++ b/pymolfile/molfile/pymolfile.h @@ -52,10 +52,6 @@ struct MolObject { }; */ -static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj); -static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*data)(PyObject *)); -void del_molfile_plugin_list(PyObject* molcapsule); -void del_molfile_file_handle(PyObject* molcapsule); #if PY_VERSION_HEX >= 0x03000000 #define PyInt_AsSsize_t PyLong_AsSsize_t @@ -69,6 +65,11 @@ void del_molfile_file_handle(PyObject* molcapsule); #define PyString_Type PyBytes_Type #define PyInt_Type PyLong_Type +void del_molfile_plugin_list(PyObject* molcapsule); +void del_molfile_file_handle(PyObject* molcapsule); + +static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj); + static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj) { void *ret = PyCapsule_GetPointer(obj, "plugin_handle"); @@ -78,6 +79,7 @@ static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj) return ret; } +static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*destr)(PyObject *)); static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*destr)(PyObject *)) { PyObject *ret = PyCapsule_New(ptr, "plugin_handle", destr); @@ -90,11 +92,18 @@ static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*destr)(PyObject #else #define PyBytes_FromString PyString_FromString +void del_molfile_plugin_list(void* molcapsule); +void del_molfile_file_handle(void* molcapsule); + +static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj); + static void * PyMolfileCapsule_AsVoidPtr(PyObject *obj) { return PyCObject_AsVoidPtr(obj); } +static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*destr)(void *)); + static PyObject * PyMolfileCapsule_FromVoidPtr(void *ptr, void (*destr)(void *)) { return PyCObject_FromVoidPtr(ptr, destr); diff --git a/setup.py b/setup.py index e3fd83f..440b38d 100644 --- a/setup.py +++ b/setup.py @@ -1,13 +1,38 @@ #!/usr/bin/env python +import os +import sysconfig import sys try: from setuptools.command.build_ext import build_ext from setuptools import setup, Extension, Command, find_packages + from Cython.Build import cythonize + from Cython.Distutils import build_ext except: from distutils.command.build_ext import build_ext from distutils import setup, Extension, Command, find_packages + from Cython.Build import cythonize + from Cython.Distutils import build_ext +def get_ext_filename_without_platform_suffix(filename): + name, ext = os.path.splitext(filename) + ext_suffix = sysconfig.get_config_var('EXT_SUFFIX') + + if ext_suffix == ext: + return filename + + ext_suffix = ext_suffix.replace(ext, '') + idx = name.find(ext_suffix) + + if idx == -1: + return filename + else: + return name[:idx] + ext + +class BuildExtWithoutPlatformSuffix(build_ext): + def get_ext_filename(self, ext_name): + filename = super().get_ext_filename(ext_name) + return get_ext_filename_without_platform_suffix(filename) VERSION = "0.0.1" CLASSIFIERS = [ @@ -96,36 +121,46 @@ largefile_macros = [ ] if __name__ == '__main__': + libpymolfile_module = Extension( 'pymolfile/molfile/_libpymolfile', sources=[ 'pymolfile/molfile/libpymolfile.i' , - 'pymolfile/molfile/pymolfile.c' + 'pymolfile/molfile/pymolfile.cxx' ], - swig_opts=['-py3 -c++ -python'], + swig_opts=['-py3', '-Wall', '-c++'], library_dirs=[ - '/usr/lib', - 'lib/' + 'pymolfile/molfile/lib/', + 'pymolfile/molfile/lib/tng/lib/' ], - libraries=['libmolfile_plugin.a'], + libraries=['netcdf','tng_io','expat'], include_dirs = [ - get_numpy_include, - '/usr/include', + get_numpy_include(), 'pymolfile/molfile', 'pymolfile/molfile/lib/' 'pymolfile/molfile/include/', 'pymolfile/molfile/include/molfile_plugin/include', 'pymolfile/molfile/lib/molfile_plugin/lib', 'pymolfile/molfile/include/plugin_src/include', - 'pymolfile/molfile/include/netcdf/include', - 'pymolfile/molfile/include/expat/include', + #'pymolfile/molfile/include/netcdf/include', + #'pymolfile/molfile/include/expat/include', 'pymolfile/molfile/include/tng/include', ], extra_compile_args = [ - '-DNDEBUG', '-DUNIX', '-D__UNIX', '-m64', - '-fPIC', '-O2', '-w', '-fmessage-length=0' - ] + '-fPIC', '-shared', '-O2', '-w' + #'-DNDEBUG', '-DUNIX', '-D__UNIX', '-m64', + #'-fPIC', '-O2', '-w', '-fmessage-length=0' + ], + extra_link_args = [ + 'pymolfile/molfile/lib/molfile_plugin/lib/libmolfile_plugin.a' + ], + define_macros = largefile_macros ) + #if sys.version_info > (3,): + # command_extension={'build_ext': BuildExtWithoutPlatformSuffix} + #else: + # command_extension={} + command_extension={} setup( name = "pymolfile", @@ -138,29 +173,10 @@ if __name__ == '__main__': url = "https://gitlab.mpcdf.mpg.de/berko/pymolfile", zip_safe = False, packages = find_packages(), + cmdclass= command_extension, ext_modules = [ #libmolfile_plugin_compile(cmake_libmolfile_plugin_compile), libpymolfile_module, -# NumpyExtension( -# "pymolfile/molfile/_libpymolfile", -# "pymolfile" -# sources = [ -# "pymolfile/molfile/libpymolfile_wrap.cxx", -# "pymolfile/molfile/pymolfile.c", -# "pymolfile/molfile/lib/libmolfile_plugin.a", -# ], -# include_dirs = [ -# get_numpy_include, -# "pymolfile/molfile/include/", -# "pymolfile/molfile/include/molfile_plugin/include", -# "pymolfile/molfile/lib/molfile_plugin/lib", -# "pymolfile/molfile/include/plugin_src/include", -# "pymolfile/molfile/include/netcdf/include", -# "pymolfile/molfile/include/expat/include", -# "pymolfile/molfile/include/tng/include", -# ], -# define_macros = largefile_macros -# ), ], py_modules=["pymolfile"], requires = [ "numpy" ], -- GitLab