libpymolfile.py 10 KB
Newer Older
Berk Onat's avatar
Berk Onat committed
1
2
3
4
5
6
7
8
9
10
# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.12
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

"""

:Author:  Berk Onat <b.onat@warwick.ac.uk>
:Year:    2017
11
:Licence: UIUC LICENSE
Berk Onat's avatar
Berk Onat committed
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115



"""


from sys import version_info as _swig_python_version_info
if _swig_python_version_info >= (2, 7, 0):
    def swig_import_helper():
        import importlib
        pkg = __name__.rpartition('.')[0]
        mname = '.'.join((pkg, '_libpymolfile')).lstrip('.')
        try:
            return importlib.import_module(mname)
        except ImportError:
            return importlib.import_module('_libpymolfile')
    _libpymolfile = swig_import_helper()
    del swig_import_helper
elif _swig_python_version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_libpymolfile', [dirname(__file__)])
        except ImportError:
            import _libpymolfile
            return _libpymolfile
        try:
            _mod = imp.load_module('_libpymolfile', fp, pathname, description)
        finally:
            if fp is not None:
                fp.close()
        return _mod
    _libpymolfile = swig_import_helper()
    del swig_import_helper
else:
    import _libpymolfile
del _swig_python_version_info

try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        if _newclass:
            object.__setattr__(self, name, value)
        else:
            self.__dict__[name] = value
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr(self, class_type, name):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except __builtin__.Exception:
    class _object:
        pass
    _newclass = 0

pluginOK = _libpymolfile.pluginOK
pluginNOINIT = _libpymolfile.pluginNOINIT
pluginCLOSE = _libpymolfile.pluginCLOSE
pluginNOMEM = _libpymolfile.pluginNOMEM
pluginENDOFFILE = _libpymolfile.pluginENDOFFILE
pluginFILENOTFOUND = _libpymolfile.pluginFILENOTFOUND
pluginFORMATERROR = _libpymolfile.pluginFORMATERROR
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
class MolAtoms(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, MolAtoms, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, MolAtoms, name)
    __repr__ = _swig_repr
    __swig_setmethods__["name"] = _libpymolfile.MolAtoms_name_set
    __swig_getmethods__["name"] = _libpymolfile.MolAtoms_name_get
    if _newclass:
        name = _swig_property(_libpymolfile.MolAtoms_name_get, _libpymolfile.MolAtoms_name_set)
    __swig_setmethods__["type"] = _libpymolfile.MolAtoms_type_set
    __swig_getmethods__["type"] = _libpymolfile.MolAtoms_type_get
    if _newclass:
        type = _swig_property(_libpymolfile.MolAtoms_type_get, _libpymolfile.MolAtoms_type_set)
    __swig_setmethods__["resname"] = _libpymolfile.MolAtoms_resname_set
    __swig_getmethods__["resname"] = _libpymolfile.MolAtoms_resname_get
    if _newclass:
        resname = _swig_property(_libpymolfile.MolAtoms_resname_get, _libpymolfile.MolAtoms_resname_set)
    __swig_setmethods__["resid"] = _libpymolfile.MolAtoms_resid_set
    __swig_getmethods__["resid"] = _libpymolfile.MolAtoms_resid_get
    if _newclass:
        resid = _swig_property(_libpymolfile.MolAtoms_resid_get, _libpymolfile.MolAtoms_resid_set)
    __swig_setmethods__["segid"] = _libpymolfile.MolAtoms_segid_set
    __swig_getmethods__["segid"] = _libpymolfile.MolAtoms_segid_get
    if _newclass:
        segid = _swig_property(_libpymolfile.MolAtoms_segid_get, _libpymolfile.MolAtoms_segid_set)
    __swig_setmethods__["chain"] = _libpymolfile.MolAtoms_chain_set
    __swig_getmethods__["chain"] = _libpymolfile.MolAtoms_chain_get
    if _newclass:
        chain = _swig_property(_libpymolfile.MolAtoms_chain_get, _libpymolfile.MolAtoms_chain_set)
    __swig_setmethods__["altloc"] = _libpymolfile.MolAtoms_altloc_set
    __swig_getmethods__["altloc"] = _libpymolfile.MolAtoms_altloc_get
    if _newclass:
        altloc = _swig_property(_libpymolfile.MolAtoms_altloc_get, _libpymolfile.MolAtoms_altloc_set)
    __swig_setmethods__["insertion"] = _libpymolfile.MolAtoms_insertion_set
    __swig_getmethods__["insertion"] = _libpymolfile.MolAtoms_insertion_get
    if _newclass:
        insertion = _swig_property(_libpymolfile.MolAtoms_insertion_get, _libpymolfile.MolAtoms_insertion_set)
    __swig_setmethods__["occupancy"] = _libpymolfile.MolAtoms_occupancy_set
    __swig_getmethods__["occupancy"] = _libpymolfile.MolAtoms_occupancy_get
    if _newclass:
        occupancy = _swig_property(_libpymolfile.MolAtoms_occupancy_get, _libpymolfile.MolAtoms_occupancy_set)
    __swig_setmethods__["bfactor"] = _libpymolfile.MolAtoms_bfactor_set
    __swig_getmethods__["bfactor"] = _libpymolfile.MolAtoms_bfactor_get
    if _newclass:
        bfactor = _swig_property(_libpymolfile.MolAtoms_bfactor_get, _libpymolfile.MolAtoms_bfactor_set)
    __swig_setmethods__["mass"] = _libpymolfile.MolAtoms_mass_set
    __swig_getmethods__["mass"] = _libpymolfile.MolAtoms_mass_get
    if _newclass:
        mass = _swig_property(_libpymolfile.MolAtoms_mass_get, _libpymolfile.MolAtoms_mass_set)
    __swig_setmethods__["charge"] = _libpymolfile.MolAtoms_charge_set
    __swig_getmethods__["charge"] = _libpymolfile.MolAtoms_charge_get
    if _newclass:
        charge = _swig_property(_libpymolfile.MolAtoms_charge_get, _libpymolfile.MolAtoms_charge_set)
    __swig_setmethods__["radius"] = _libpymolfile.MolAtoms_radius_set
    __swig_getmethods__["radius"] = _libpymolfile.MolAtoms_radius_get
    if _newclass:
        radius = _swig_property(_libpymolfile.MolAtoms_radius_get, _libpymolfile.MolAtoms_radius_set)
    __swig_setmethods__["atomicnumber"] = _libpymolfile.MolAtoms_atomicnumber_set
    __swig_getmethods__["atomicnumber"] = _libpymolfile.MolAtoms_atomicnumber_get
    if _newclass:
        atomicnumber = _swig_property(_libpymolfile.MolAtoms_atomicnumber_get, _libpymolfile.MolAtoms_atomicnumber_set)
    __swig_setmethods__["ctnumber"] = _libpymolfile.MolAtoms_ctnumber_set
    __swig_getmethods__["ctnumber"] = _libpymolfile.MolAtoms_ctnumber_get
    if _newclass:
        ctnumber = _swig_property(_libpymolfile.MolAtoms_ctnumber_get, _libpymolfile.MolAtoms_ctnumber_set)

    def __init__(self):
        this = _libpymolfile.new_MolAtoms()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this
    __swig_destroy__ = _libpymolfile.delete_MolAtoms
    __del__ = lambda self: None
MolAtoms_swigregister = _libpymolfile.MolAtoms_swigregister
MolAtoms_swigregister(MolAtoms)


def del_plugin_structure(pymolfile_atoms: 'PyObject *') -> "void":
    return _libpymolfile.del_plugin_structure(pymolfile_atoms)
del_plugin_structure = _libpymolfile.del_plugin_structure

def alloc_plugin_structure(arg1: 'PyObject *', args: 'PyObject *') -> "PyObject *":
    return _libpymolfile.alloc_plugin_structure(arg1, args)
alloc_plugin_structure = _libpymolfile.alloc_plugin_structure

def del_plugin(pymolfile_plugin: 'PyObject *') -> "void":
    return _libpymolfile.del_plugin(pymolfile_plugin)
del_plugin = _libpymolfile.del_plugin
Berk Onat's avatar
Berk Onat committed
206

207
208
209
210
211
212
213
214
215
216
217
218
219
def del_atoms(pymolfile_atoms: 'PyObject *') -> "void":
    return _libpymolfile.del_atoms(pymolfile_atoms)
del_atoms = _libpymolfile.del_atoms

def del_atomname(pymolfile_atoms: 'PyObject *') -> "void":
    return _libpymolfile.del_atomname(pymolfile_atoms)
del_atomname = _libpymolfile.del_atomname

def alloc_plugin(arg1: 'PyObject *', args: 'PyObject *') -> "PyObject *":
    return _libpymolfile.alloc_plugin(arg1, args)
alloc_plugin = _libpymolfile.alloc_plugin

def molfile_plugin_list(maxsize: 'int') -> "molfile_plugin_t **":
Berk Onat's avatar
Berk Onat committed
220
221
222
    """molfile_plugin_list(maxsize) -> molfile_plugin_t **"""
    return _libpymolfile.molfile_plugin_list(maxsize)

223
def molfile_init() -> "int":
Berk Onat's avatar
Berk Onat committed
224
225
226
    """molfile_init() -> int"""
    return _libpymolfile.molfile_init()

227
def molfile_finish() -> "int":
Berk Onat's avatar
Berk Onat committed
228
229
230
    """molfile_finish() -> int"""
    return _libpymolfile.molfile_finish()

231
def get_plugin(plugin_list: 'molfile_plugin_t **', plugin_no: 'int') -> "molfile_plugin_t *":
Berk Onat's avatar
Berk Onat committed
232
233
234
    """get_plugin(plugin_list, plugin_no) -> molfile_plugin_t *"""
    return _libpymolfile.get_plugin(plugin_list, plugin_no)

235
def molfile_plugin_info(plugin_list: 'molfile_plugin_t **', plugin_no: 'int') -> "PyObject *":
Berk Onat's avatar
Berk Onat committed
236
237
    """molfile_plugin_info(plugin_list, plugin_no) -> PyObject *"""
    return _libpymolfile.molfile_plugin_info(plugin_list, plugin_no)
238
239
240
241
242
243
244
245

def open_file_read(plugin: 'molfile_plugin_t *', fname: 'char *', ftype: 'char *', natoms: 'int') -> "PyObject *":
    """open_file_read(plugin, fname, ftype, natoms) -> PyObject *"""
    return _libpymolfile.open_file_read(plugin, fname, ftype, natoms)

def read_structure(molpack: 'PyObject *') -> "PyObject *":
    """read_structure(molpack) -> PyObject *"""
    return _libpymolfile.read_structure(molpack)
Berk Onat's avatar
Berk Onat committed
246
247
248
# This file is compatible with both classic and new-style classes.